Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QMY48_RS19625 Genome accession   NZ_CP127035
Coordinates   4021740..4022504 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain TW10573     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4016740..4027504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY48_RS19615 (QMY48_03870) nikR 4020530..4020931 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QMY48_RS19620 (QMY48_03871) nikE 4020937..4021743 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  QMY48_RS19625 (QMY48_03872) amiE 4021740..4022504 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  QMY48_RS19630 (QMY48_03873) nikC 4022504..4023337 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  QMY48_RS19635 (QMY48_03874) nikB 4023334..4024278 (-) 945 WP_182587769.1 nickel ABC transporter permease subunit NikB -
  QMY48_RS19640 (QMY48_03875) nikA 4024278..4025852 (-) 1575 WP_000953356.1 nickel ABC transporter substrate-binding protein -
  QMY48_RS19645 (QMY48_03876) acpT 4025963..4026550 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=770359 QMY48_RS19625 WP_001136236.1 4021740..4022504(-) (amiE) [Escherichia coli strain TW10573]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=770359 QMY48_RS19625 WP_001136236.1 4021740..4022504(-) (amiE) [Escherichia coli strain TW10573]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398