Detailed information NTG0770011

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCP72_RS18065
• Genome accession: NZ_CP115239
• Coordinates: 3823336..3824208 (+)
• Length: 290 a.a.
• NCBI ID: WP_023084852.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F045
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3818336..3829208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP72_RS18050 (PCP72_18030)	-	3819719..3820183 (-)	465	WP_003107295.1	pilin	-
PCP72_RS18055 (PCP72_18035)	pilB	3820414..3822114 (+)	1701	WP_023084853.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCP72_RS18060 (PCP72_18040)	pilC	3822118..3823335 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PCP72_RS18065 (PCP72_18045)	pilD	3823336..3824208 (+)	873	WP_023084852.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PCP72_RS18070 (PCP72_18050)	coaE	3824205..3824816 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PCP72_RS18075 (PCP72_18055)	yacG	3824813..3825013 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PCP72_RS18080 (PCP72_18060)	-	3825050..3825259 (-)	210	WP_003094660.1	hypothetical protein	-
PCP72_RS18085 (PCP72_18065)	-	3825365..3826054 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PCP72_RS18090 (PCP72_18070)	-	3826051..3826521 (-)	471	WP_003094664.1	hypothetical protein	-
PCP72_RS18095 (PCP72_18075)	-	3826518..3826943 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PCP72_RS18100 (PCP72_18080)	-	3827076..3827705 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PCP72_RS18105 (PCP72_18085)	-	3827702..3828151 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PCP72_RS18110 (PCP72_18090)	-	3828177..3828347 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31877.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=770011 PCP72_RS18065 WP_023084852.1 3823336..3824208(+) (pilD) [Pseudomonas aeruginosa strain F045]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMFLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=770011 PCP72_RS18065 WP_023084852.1 3823336..3824208(+) (pilD) [Pseudomonas aeruginosa strain F045]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGTTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469