Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   QP019_RS11580 Genome accession   NZ_CP126978
Coordinates   2397687..2397983 (+) Length   98 a.a.
NCBI ID   WP_039094674.1    Uniprot ID   -
Organism   Gallibacterium anatis strain YJ922     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2392687..2402983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS11550 (QP019_11550) - 2393459..2394430 (+) 972 WP_179255190.1 sigma 54-interacting transcriptional regulator -
  QP019_RS11555 (QP019_11555) sspA 2394571..2395209 (+) 639 WP_013745826.1 stringent starvation protein SspA -
  QP019_RS11560 (QP019_11560) - 2395219..2395680 (+) 462 WP_039085375.1 ClpXP protease specificity-enhancing factor -
  QP019_RS11565 (QP019_11565) - 2395824..2396357 (+) 534 WP_039081243.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QP019_RS11570 (QP019_11570) - 2396347..2397069 (+) 723 WP_039094678.1 type II secretion pathway, component PulJ -
  QP019_RS11575 (QP019_11575) - 2397053..2397706 (+) 654 WP_039094676.1 DUF2572 family protein -
  QP019_RS11580 (QP019_11580) comQ 2397687..2397983 (+) 297 WP_039094674.1 DUF5374 domain-containing protein Machinery gene
  QP019_RS11585 (QP019_11585) glpE 2398043..2398369 (+) 327 WP_039084270.1 thiosulfate sulfurtransferase GlpE -
  QP019_RS11590 (QP019_11590) - 2398520..2399041 (+) 522 WP_285096280.1 NAD(P)H-dependent oxidoreductase -
  QP019_RS11595 (QP019_11595) - 2399038..2399943 (+) 906 WP_285096281.1 pirin family protein -
  QP019_RS11600 (QP019_11600) ppx 2400027..2401511 (-) 1485 WP_285096282.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11148.09 Da        Isoelectric Point: 10.0354

>NTDB_id=769755 QP019_RS11580 WP_039094674.1 2397687..2397983(+) (comQ) [Gallibacterium anatis strain YJ922]
MILTQRNLKGSAIINVLVTLIFLSLLLLSTQHWIKRQQQQTAILWQATQALQIAENQWNLRVIGENCEKNVQQNGIVFNI
QCSGNQVVVHYPLGKIVL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=769755 QP019_RS11580 WP_039094674.1 2397687..2397983(+) (comQ) [Gallibacterium anatis strain YJ922]
GTGATTTTGACGCAACGTAATCTGAAAGGCAGTGCTATTATCAATGTCTTGGTGACGCTGATATTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACGGCAATTTTGTGGCAAGCGACACAGGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTTATCGGTGAAAATTGTGAAAAAAACGTACAACAAAACGGCATTGTTTTTAATATT
CAATGCAGCGGCAATCAGGTAGTGGTGCATTATCCGCTCGGAAAAATTGTGTTGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

38.776

100

0.388