Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   QP020_RS11490 Genome accession   NZ_CP126977
Coordinates   2421064..2421360 (+) Length   98 a.a.
NCBI ID   WP_039081240.1    Uniprot ID   A0A0A2YA89
Organism   Gallibacterium anatis strain DFSO2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2416064..2426360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS11460 (QP020_11460) - 2416836..2417807 (+) 972 WP_285099437.1 sigma 54-interacting transcriptional regulator -
  QP020_RS11465 (QP020_11465) sspA 2417948..2418586 (+) 639 WP_013745826.1 stringent starvation protein SspA -
  QP020_RS11470 (QP020_11470) - 2418596..2419057 (+) 462 WP_039085375.1 ClpXP protease specificity-enhancing factor -
  QP020_RS11475 (QP020_11475) - 2419201..2419734 (+) 534 WP_039081243.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QP020_RS11480 (QP020_11480) - 2419772..2420446 (+) 675 WP_285098171.1 Type II secretory pathway, component PulJ -
  QP020_RS11485 (QP020_11485) - 2420430..2421083 (+) 654 WP_039081241.1 DUF2572 family protein -
  QP020_RS11490 (QP020_11490) comQ 2421064..2421360 (+) 297 WP_039081240.1 DUF5374 domain-containing protein Machinery gene
  QP020_RS11495 (QP020_11495) glpE 2421420..2421746 (+) 327 WP_285098173.1 thiosulfate sulfurtransferase GlpE -
  QP020_RS11500 (QP020_11500) - 2421897..2422418 (+) 522 WP_094871990.1 NAD(P)H-dependent oxidoreductase -
  QP020_RS11505 (QP020_11505) - 2422415..2423320 (+) 906 WP_285098175.1 pirin family protein -
  QP020_RS11510 (QP020_11510) ppx 2423404..2424888 (-) 1485 WP_285098177.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11131.08 Da        Isoelectric Point: 9.3292

>NTDB_id=769701 QP020_RS11490 WP_039081240.1 2421064..2421360(+) (comQ) [Gallibacterium anatis strain DFSO2]
MILAQHNLKGSAIINVLVTLMFLSLLLLSTQHWIKRQQQQTAILWQATQALQIAENQWNLRVIGENCEKNIQQNGIVFNI
QCSGNQVVVHYPLGKIVL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=769701 QP020_RS11490 WP_039081240.1 2421064..2421360(+) (comQ) [Gallibacterium anatis strain DFSO2]
GTGATTTTGGCGCAACATAATCTGAAAGGCAGTGCGATTATCAATGTCTTGGTGACGCTGATGTTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACAGCAATTTTGTGGCAGGCGACACAAGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTCATCGGTGAAAATTGTGAAAAAAATATACAACAAAACGGCATTGTTTTTAATATC
CAATGCAGCGGCAATCAGGTAGTGGTGCATTATCCGCTGGGAAAAATTGTGTTGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2YA89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

38.776

100

0.388