Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O8413_RS10470 Genome accession   NZ_CP115188
Coordinates   2260541..2261242 (+) Length   233 a.a.
NCBI ID   WP_283512504.1    Uniprot ID   -
Organism   Vibrio furnissii strain MT14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2255541..2266242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O8413_RS10450 (O8413_10450) - 2255975..2256637 (+) 663 WP_004728474.1 hypothetical protein -
  O8413_RS10455 (O8413_10455) - 2256693..2259002 (+) 2310 WP_283512503.1 Tex family protein -
  O8413_RS10460 (O8413_10460) - 2259085..2259555 (-) 471 WP_004728470.1 hypothetical protein -
  O8413_RS10465 (O8413_10465) bioH 2259684..2260454 (-) 771 WP_158141460.1 pimeloyl-ACP methyl ester esterase BioH -
  O8413_RS10470 (O8413_10470) comF 2260541..2261242 (+) 702 WP_283512504.1 phosphoribosyltransferase family protein Machinery gene
  O8413_RS10475 (O8413_10475) nfuA 2261343..2261936 (+) 594 WP_283512505.1 Fe-S biogenesis protein NfuA -
  O8413_RS10480 (O8413_10480) nudE 2262082..2262630 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  O8413_RS10485 (O8413_10485) cysQ 2262654..2263481 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  O8413_RS10490 (O8413_10490) - 2263542..2264300 (-) 759 WP_283512506.1 type II secretion system protein N -
  O8413_RS10495 (O8413_10495) - 2264297..2264806 (-) 510 WP_158141343.1 type II secretion system protein M -
  O8413_RS10500 (O8413_10500) gspL 2264816..2266027 (-) 1212 WP_283512507.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26235.61 Da        Isoelectric Point: 8.9322

>NTDB_id=768814 O8413_RS10470 WP_283512504.1 2260541..2261242(+) (comF) [Vibrio furnissii strain MT14]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLITCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPH
ATVPQHGLDKAQRRRNLNRAFVLNHVPCLQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=768814 O8413_RS10470 WP_283512504.1 2260541..2261242(+) (comF) [Vibrio furnissii strain MT14]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTAGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAGTGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCTGCGCCGCTGATCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGATTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGTGCC
GTGCCTGCAACACGTAGCGATTGTTGACGATGTCGTCACCACTGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGTACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

64.807

100

0.648
  comF Vibrio campbellii strain DS40M4

48.954

100

0.502