Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   O9K61_RS08460 Genome accession   NZ_CP115185
Coordinates   1653322..1654101 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 26.3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648322..1659101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O9K61_RS08440 (O9K61_08440) trmFO 1649009..1650316 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O9K61_RS08445 (O9K61_08445) xerC 1650386..1651303 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  O9K61_RS08450 (O9K61_08450) hslV 1651319..1651864 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  O9K61_RS08455 (O9K61_08455) hslU 1651881..1653284 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  O9K61_RS08460 (O9K61_08460) codY 1653322..1654101 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  O9K61_RS08465 (O9K61_08465) flgB 1654455..1654844 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  O9K61_RS08470 (O9K61_08470) flgC 1654844..1655296 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  O9K61_RS08475 (O9K61_08475) fliE 1655307..1655627 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  O9K61_RS08480 (O9K61_08480) fliF 1655670..1657280 (+) 1611 WP_032866060.1 flagellar basal-body MS-ring/collar protein FliF -
  O9K61_RS08485 (O9K61_08485) fliG 1657293..1658309 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  O9K61_RS08490 (O9K61_08490) fliH 1658302..1659057 (+) 756 WP_032866059.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=768747 O9K61_RS08460 WP_003154263.1 1653322..1654101(+) (codY) [Bacillus velezensis strain 26.3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=768747 O9K61_RS08460 WP_003154263.1 1653322..1654101(+) (codY) [Bacillus velezensis strain 26.3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471