Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ORQ91_RS11125 Genome accession   NZ_CP115172
Coordinates   2177157..2177936 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain BS-10L     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2172157..2182936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORQ91_RS11095 (ORQ91_02220) fliH 2172271..2173035 (-) 765 WP_122631395.1 flagellar assembly protein FliH -
  ORQ91_RS11100 (ORQ91_02221) fliG 2173028..2174044 (-) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  ORQ91_RS11105 (ORQ91_02222) fliF 2174056..2175648 (-) 1593 WP_073205172.1 flagellar basal-body MS-ring/collar protein FliF -
  ORQ91_RS11110 (ORQ91_02223) fliE 2175698..2176015 (-) 318 WP_025092577.1 flagellar hook-basal body complex protein FliE -
  ORQ91_RS11115 (ORQ91_02224) flgC 2176027..2176479 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  ORQ91_RS11120 (ORQ91_02225) flgB 2176479..2176868 (-) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  ORQ91_RS11125 (ORQ91_02226) codY 2177157..2177936 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ORQ91_RS11130 (ORQ91_02227) hslU 2177971..2179371 (-) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  ORQ91_RS11135 (ORQ91_02228) hslV 2179388..2179933 (-) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  ORQ91_RS11140 (ORQ91_02229) xerC 2179948..2180865 (-) 918 WP_122631396.1 tyrosine recombinase XerC -
  ORQ91_RS11145 (ORQ91_02230) trmFO 2180928..2182232 (-) 1305 WP_073205170.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=768557 ORQ91_RS11125 WP_007499612.1 2177157..2177936(-) (codY) [Bacillus safensis strain BS-10L]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=768557 ORQ91_RS11125 WP_007499612.1 2177157..2177936(-) (codY) [Bacillus safensis strain BS-10L]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471