Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M8445_RS08975 Genome accession   NZ_CP115165
Coordinates   1850589..1851197 (-) Length   202 a.a.
NCBI ID   WP_273987435.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1845589..1856197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS08955 (M8445_08955) - 1846634..1847815 (+) 1182 WP_273987431.1 glycosyltransferase family 4 protein -
  M8445_RS08960 (M8445_08960) - 1847757..1848449 (-) 693 WP_273987432.1 glycosyltransferase -
  M8445_RS08965 (M8445_08965) - 1848545..1849780 (+) 1236 WP_273987433.1 MFS transporter -
  M8445_RS08970 (M8445_08970) - 1849813..1850499 (+) 687 WP_273987434.1 polysaccharide deacetylase family protein -
  M8445_RS08975 (M8445_08975) recR 1850589..1851197 (-) 609 WP_273987435.1 recombination mediator RecR Machinery gene
  M8445_RS08980 (M8445_08980) - 1851205..1851495 (-) 291 WP_273987436.1 YbaB/EbfC family nucleoid-associated protein -
  M8445_RS08985 (M8445_08985) - 1851564..1852241 (-) 678 WP_273987437.1 NUDIX hydrolase -
  M8445_RS08990 (M8445_08990) - 1852325..1854424 (-) 2100 WP_273987438.1 amylo-alpha-1,6-glucosidase -
  M8445_RS08995 (M8445_08995) infC 1854554..1855216 (+) 663 WP_273987439.1 translation initiation factor IF-3 -
  M8445_RS09000 (M8445_09000) - 1855450..1855695 (+) 246 WP_273987440.1 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22108.48 Da        Isoelectric Point: 6.3340

>NTDB_id=768518 M8445_RS08975 WP_273987435.1 1850589..1851197(-) (recR) [Deinococcus aquaticus strain PB-314]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLEAKRDLHTCPVCFNITDADRCDVCSDPTRDQD
LICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQANQEVILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPPVS

Nucleotide


Download         Length: 609 bp        

>NTDB_id=768518 M8445_RS08975 WP_273987435.1 1850589..1851197(-) (recR) [Deinococcus aquaticus strain PB-314]
TTGAAGTACCCTCCATCGCTGGTGGCGCTGATCCGCGAACTGTCGCGCCTGCCGGGCATCGGCCCGAAAAGCGCGCAGCG
GCTGGCGTTCCACCTGTTCGAGCAGCCGCGCGAGGACATCGAGCGGCTCTCGCGGGCGCTGCTGGAAGCCAAGCGGGACC
TGCACACCTGCCCCGTGTGCTTCAACATCACGGACGCAGACCGCTGCGACGTGTGCAGCGACCCGACCCGCGATCAGGAC
CTGATCTGCGTGGTCGAGGAACCCGGTGACGTGATCGCCATCGAACGCAGCGGCGAGTACCGTGGCCTGTACCACGTGCT
GCACGGCGTGCTGAGCCCCATGAACGGCGTCGGCCCGGACAAACTGCACATCCGGCCGCTGCTGCCGCGCGTGCAGGCGA
ACCAGGAGGTCATCCTGGCGACCGGCACGACCGTCGAGGGCGACGCGACCGCGCTGTACCTCCAGCGGCTGCTCGAACCG
CTGGGCGCCGTCGTGAGCCGCATCGCGTACGGCCTCCCGGTGGGCGGCGCGCTGGAATACGCCGACGAGGTTACGCTGGG
CCGCGCCCTGGCGGGCCGTCAACGCGTCAGCAAACCCCCGGTCAGCTGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

87.94

98.515

0.866