Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M8445_RS07975 Genome accession   NZ_CP115165
Coordinates   1641976..1642572 (+) Length   198 a.a.
NCBI ID   WP_337961621.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1636976..1647572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS07950 (M8445_07950) - 1637660..1639627 (+) 1968 WP_273987181.1 endonuclease -
  M8445_RS07955 (M8445_07955) - 1639691..1640218 (+) 528 WP_273987183.1 DinB family protein -
  M8445_RS07960 (M8445_07960) - 1640215..1640661 (+) 447 WP_273987185.1 hypothetical protein -
  M8445_RS07965 (M8445_07965) - 1640874..1641152 (-) 279 WP_273987186.1 hypothetical protein -
  M8445_RS07970 (M8445_07970) - 1641419..1641937 (+) 519 WP_273987189.1 hypothetical protein -
  M8445_RS07975 (M8445_07975) comF 1641976..1642572 (+) 597 WP_337961621.1 ComF family protein Machinery gene
  M8445_RS07980 (M8445_07980) - 1642588..1643133 (-) 546 WP_273987192.1 DUF1684 domain-containing protein -
  M8445_RS07985 (M8445_07985) - 1643133..1643354 (-) 222 WP_273987194.1 RNA-binding S4 domain-containing protein -
  M8445_RS07990 (M8445_07990) - 1643428..1643979 (-) 552 WP_273987196.1 hypothetical protein -
  M8445_RS07995 (M8445_07995) - 1643976..1644536 (-) 561 WP_273987198.1 hypothetical protein -
  M8445_RS08000 (M8445_08000) - 1644533..1645567 (-) 1035 WP_273987199.1 Ig domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 20958.24 Da        Isoelectric Point: 11.5599

>NTDB_id=768517 M8445_RS07975 WP_337961621.1 1641976..1642572(+) (comF) [Deinococcus aquaticus strain PB-314]
MPRACPGCGGQLGRAAGLCAACRGALHARVEAHSPLRAQPVPHLVTLGAYRGVNRRAVRTLKFGEARDLAAVLGEALAGG
VPAHWNVRAVVPVPLHPARQRQRGFNQAELLGRAVAAQLGVPCVPGLQRTRHTAQQARRHAAQREDLHGAFRARPDALPG
GPVLLIDDVFTTGNTLLACQDTLKQVGVTELYAAVIAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=768517 M8445_RS07975 WP_337961621.1 1641976..1642572(+) (comF) [Deinococcus aquaticus strain PB-314]
CTGCCGCGCGCCTGCCCCGGCTGCGGCGGGCAACTGGGCCGCGCCGCCGGACTGTGCGCCGCCTGCCGGGGCGCCCTGCA
CGCCCGCGTCGAGGCGCACAGCCCCCTGCGCGCCCAGCCGGTCCCGCACCTCGTGACGCTGGGCGCGTACCGGGGTGTGA
ACCGCCGCGCCGTCCGCACCCTGAAATTCGGGGAGGCCCGCGACCTCGCCGCCGTGCTGGGCGAGGCCCTCGCCGGGGGC
GTGCCCGCCCACTGGAACGTGCGGGCCGTCGTGCCCGTGCCTCTGCACCCGGCCCGGCAGCGGCAGCGGGGCTTCAATCA
GGCGGAACTGCTGGGCCGCGCGGTGGCCGCGCAGCTGGGCGTACCGTGCGTGCCAGGGCTGCAACGCACCCGTCACACCG
CTCAGCAGGCCCGTCGTCACGCCGCGCAGCGCGAGGACCTGCACGGCGCGTTCCGCGCCCGCCCGGACGCACTGCCGGGC
GGTCCGGTCCTGCTGATCGACGACGTGTTCACCACCGGCAACACCCTGCTCGCCTGCCAGGACACCCTGAAACAGGTGGG
CGTGACGGAGCTGTACGCCGCCGTCATCGCCCGCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(111-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.829

100

0.662