Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M8445_RS07215 Genome accession   NZ_CP115165
Coordinates   1487358..1488503 (-) Length   381 a.a.
NCBI ID   WP_273990691.1    Uniprot ID   -
Organism   Deinococcus aquaticus strain PB-314     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482358..1493503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8445_RS07185 (M8445_07185) - 1482373..1483275 (+) 903 WP_273990681.1 MBL fold metallo-hydrolase -
  M8445_RS07190 (M8445_07190) - 1483324..1483938 (+) 615 WP_273990682.1 Dps family protein -
  M8445_RS07195 (M8445_07195) - 1484012..1484503 (+) 492 WP_273990684.1 DUF4385 domain-containing protein -
  M8445_RS07200 (M8445_07200) mobA 1484568..1485152 (-) 585 WP_273990685.1 molybdenum cofactor guanylyltransferase -
  M8445_RS07205 (M8445_07205) - 1485149..1486594 (-) 1446 WP_273990686.1 aldehyde dehydrogenase family protein -
  M8445_RS07210 (M8445_07210) - 1486835..1487278 (+) 444 WP_273990688.1 superoxide dismutase -
  M8445_RS07215 (M8445_07215) pilD 1487358..1488503 (-) 1146 WP_273990691.1 prepilin peptidase Machinery gene
  M8445_RS07220 (M8445_07220) - 1488559..1489068 (-) 510 WP_273990692.1 hypothetical protein -
  M8445_RS07225 (M8445_07225) rimO 1489299..1490792 (-) 1494 WP_273990694.1 30S ribosomal protein S12 methylthiotransferase RimO -
  M8445_RS07230 (M8445_07230) - 1490918..1491334 (-) 417 WP_273990697.1 hypothetical protein -
  M8445_RS07235 (M8445_07235) minD 1491457..1492257 (+) 801 WP_273990698.1 septum site-determining protein MinD -
  M8445_RS07240 (M8445_07240) minE 1492259..1492519 (+) 261 WP_189065471.1 cell division topological specificity factor MinE -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 39864.15 Da        Isoelectric Point: 8.1003

>NTDB_id=768515 M8445_RS07215 WP_273990691.1 1487358..1488503(-) (pilD) [Deinococcus aquaticus strain PB-314]
MTPDVLLVIFAALLGLLVGSFSNVLIWRLPRGESIAFPPSHCPNCDHRLGVPDLVPVLSWLSLGGKCRYCRAPIKARYPV
VELLTGLGYGVIAALFPPLVVGWGALGLMALFTILLVGSAIDLDTYTIPDELTLPGTALGILFGLLNGRAGAEGLPDLSG
AVQGALLGAGLVVAINQFGSWVLRRFRERSYPEAPIGYQQISLALLAGAWLGPWWGLGAALLSAAVNVVARRVVRVPELL
TLGGLLVSVVLGSAGYGPGMILMVQGALAAAGATSLVAGVYWWLKYRGQTVDDAADEPADASAMGFGDVKLAAVIGAFLG
WERLLLTLVVAVFAGALFGVTQLAMKRENRVKFGPFLAVGALVALIWGAQIIEGYRGSLGL

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=768515 M8445_RS07215 WP_273990691.1 1487358..1488503(-) (pilD) [Deinococcus aquaticus strain PB-314]
GTGACCCCTGACGTCCTCCTCGTGATCTTTGCTGCCCTGCTCGGCCTGCTGGTCGGGTCGTTCTCGAACGTGCTGATCTG
GCGCCTGCCGCGCGGCGAGAGTATCGCCTTCCCGCCCAGTCACTGCCCTAACTGCGATCACCGGCTGGGCGTGCCGGATC
TGGTGCCGGTGCTGTCGTGGTTGAGCCTGGGCGGCAAGTGCCGGTACTGCCGGGCGCCCATCAAGGCGCGGTACCCGGTG
GTGGAATTGCTGACCGGGCTGGGGTACGGCGTGATCGCCGCATTATTCCCACCGCTGGTGGTCGGGTGGGGCGCGCTGGG
ATTGATGGCGCTGTTCACGATCCTGCTGGTCGGGAGTGCCATCGACCTAGACACGTACACCATCCCGGACGAGCTGACGC
TGCCGGGCACGGCGCTGGGCATCCTGTTCGGGCTCCTGAACGGCCGGGCGGGCGCCGAGGGGCTGCCGGACCTGTCGGGC
GCGGTGCAGGGCGCGCTGCTGGGTGCAGGTCTGGTCGTGGCGATCAACCAGTTCGGGTCGTGGGTGCTGCGCCGCTTCCG
GGAGCGCTCGTACCCGGAAGCGCCCATCGGGTACCAGCAGATCAGTCTGGCGCTGCTGGCCGGGGCGTGGCTGGGGCCGT
GGTGGGGCCTGGGCGCGGCGCTGCTGTCGGCGGCCGTGAACGTGGTGGCCCGGCGCGTGGTGCGCGTACCGGAACTGCTG
ACGCTGGGCGGCCTGCTGGTCAGCGTGGTGCTGGGCAGCGCCGGGTACGGCCCGGGCATGATCCTGATGGTGCAGGGTGC
GCTGGCCGCAGCGGGCGCCACGTCGCTGGTGGCGGGCGTGTACTGGTGGCTGAAGTACCGTGGGCAGACTGTGGACGACG
CGGCCGACGAACCGGCCGACGCGAGCGCCATGGGCTTCGGGGACGTGAAACTGGCCGCCGTGATCGGCGCGTTCCTGGGC
TGGGAGCGGCTGCTGCTGACGCTGGTGGTCGCGGTGTTCGCCGGGGCGCTGTTCGGCGTGACGCAGCTCGCCATGAAACG
CGAGAACCGCGTGAAGTTCGGGCCGTTCCTGGCGGTCGGTGCGCTGGTCGCCCTGATCTGGGGCGCGCAGATCATCGAGG
GGTACCGGGGCAGCCTGGGGCTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(109-226)

Type IV leader peptidase family (Peptidase_A24)

(234-340)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.619

100

0.719