Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   O1A01_RS18850 Genome accession   NZ_CP115153
Coordinates   3592571..3594919 (-) Length   782 a.a.
NCBI ID   WP_270064734.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3587571..3599919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS18835 (O1A01_18835) dtd 3589133..3589579 (-) 447 WP_066420804.1 D-aminoacyl-tRNA deacylase -
  O1A01_RS18840 (O1A01_18840) - 3589594..3591789 (-) 2196 WP_066420805.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  O1A01_RS18845 (O1A01_18845) - 3592044..3592556 (-) 513 WP_270064733.1 adenine phosphoribosyltransferase -
  O1A01_RS18850 (O1A01_18850) recJ 3592571..3594919 (-) 2349 WP_270064734.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  O1A01_RS18855 (O1A01_18855) - 3595343..3595621 (-) 279 WP_066420866.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  O1A01_RS18860 (O1A01_18860) - 3595618..3596541 (-) 924 WP_066420867.1 cation diffusion facilitator family transporter -
  O1A01_RS18865 (O1A01_18865) secDF 3596785..3599037 (-) 2253 WP_270064735.1 protein translocase subunit SecDF -
  O1A01_RS18870 (O1A01_18870) - 3599455..3599730 (-) 276 WP_066420864.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 88974.30 Da        Isoelectric Point: 5.0819

>NTDB_id=768360 O1A01_RS18850 WP_270064734.1 3592571..3594919(-) (recJ) [Sutcliffiella sp. NC1]
MLLSKSRWNIKKPNEEKVKELVDTLKVTPLIATLLVNRGIEDVEEASSFLNINEMDFHDPFLLEDMEKVVERIKTAVQKE
EKILVFGDYDADGVSSTTVLLTALQEIGARADFYIPNRFTEGYGPNETAFRWAKEQNYTLIITVDTGISAHHEGEVAKEL
GLDLIITDHHEPSPTLPESYAIIHPKKTTCSYPYKELAGVGVAFKVAHALLGRVPEHLIEIAAIGTIADLVPLTGENRLI
AYRGIRQMKSTTRPGLRALFQKCGVDMANITEETIGFTIGPRINAVGRLADADPAVHLLMATTYEEAVALVDEIDGYNKE
RQQIVAKITEEAIKQVEEKYPPEEHSFIIVEGNDWNAGVIGIVASRLVDKFYRPTIVLSLDDETGLAKGSARSIKGFDLF
ENLSECRDILPHFGGHPMAAGMTLEIKNVHELRNRMNKKASEILSEEDFIPITDVDMQCELEDISLQTIEQLDRLAPYGV
ANPKPKVVVPNASLQQIRQIGSNNTHLKLMIEKNNESLDCVGFGFGDAYHEISPSCEIHVLGELSINEWNNIRKPQLFIQ
DIKIDEWQLFDIRSSKQLSNTLKQLNKEKARLVHFSSEALHDLPIAEEWKSNSLHIADIENYRFSEETHLILLDLPTDEE
QLISLIKLAKPTRIYASFYQRENHFFSTIPTRDHFKWFYSLIMKKGSIDLNRYAEDIAKTRGWSKETVDFISQVFFELEF
VTIDNGFISLNSGSMKRDLTESRTYQKKQKQIELENKFLYSTYHQLKTWFDEHVNELRTVYS

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=768360 O1A01_RS18850 WP_270064734.1 3592571..3594919(-) (recJ) [Sutcliffiella sp. NC1]
GTGTTATTATCAAAATCTCGTTGGAATATAAAAAAGCCAAATGAAGAAAAAGTGAAAGAGCTAGTAGACACATTAAAGGT
AACACCTCTAATTGCTACTCTTTTAGTCAATAGAGGCATTGAAGATGTAGAAGAAGCCTCATCTTTCCTTAATATTAATG
AAATGGATTTTCACGATCCATTCTTATTAGAAGATATGGAAAAAGTAGTAGAAAGAATCAAAACCGCTGTACAGAAAGAA
GAAAAAATTCTTGTCTTTGGTGACTATGATGCTGATGGTGTAAGCAGTACGACAGTTTTATTAACAGCACTTCAAGAAAT
CGGGGCAAGAGCGGACTTTTATATACCTAATCGTTTTACAGAAGGTTATGGACCAAACGAAACAGCCTTTCGATGGGCAA
AGGAACAGAATTATACGTTAATCATAACAGTTGATACAGGTATTTCTGCTCACCATGAAGGGGAAGTTGCGAAAGAGTTA
GGTCTTGACTTAATTATTACTGACCACCACGAACCAAGTCCAACATTACCTGAATCGTATGCTATTATTCACCCGAAAAA
AACAACATGCTCTTATCCTTATAAAGAGCTTGCTGGAGTAGGAGTCGCCTTTAAAGTAGCTCATGCACTACTCGGTAGAG
TACCAGAACATTTAATAGAAATTGCAGCGATAGGGACAATTGCTGATTTAGTCCCTTTAACTGGGGAAAATAGATTAATT
GCGTATCGTGGTATTCGTCAAATGAAAAGTACGACAAGACCAGGACTACGTGCTTTATTTCAAAAATGCGGTGTGGATAT
GGCCAATATTACAGAAGAAACAATTGGCTTTACAATCGGTCCTAGAATAAACGCAGTTGGTCGTCTAGCAGATGCGGATC
CTGCTGTTCATCTATTAATGGCAACTACTTATGAGGAAGCTGTTGCGTTAGTAGATGAAATAGATGGTTATAATAAAGAA
AGACAACAAATTGTTGCTAAAATTACAGAAGAAGCGATAAAACAAGTAGAAGAAAAATATCCTCCTGAAGAGCATTCTTT
CATAATTGTGGAAGGTAATGATTGGAATGCGGGGGTTATCGGAATTGTTGCTTCAAGATTAGTGGACAAGTTTTATCGTC
CAACGATCGTGTTAAGTCTTGATGATGAAACTGGTTTAGCAAAAGGTTCAGCTCGCTCTATTAAAGGTTTTGATCTTTTT
GAGAATTTATCTGAATGCCGTGATATACTACCGCATTTCGGCGGACATCCAATGGCTGCTGGAATGACGTTAGAAATTAA
AAATGTTCATGAATTACGCAATCGAATGAATAAAAAAGCTAGTGAAATATTATCAGAAGAAGATTTCATTCCTATTACAG
ATGTTGATATGCAATGCGAACTAGAAGACATTTCGCTGCAAACGATTGAACAACTGGATAGACTCGCTCCATATGGAGTT
GCTAATCCTAAGCCAAAAGTAGTTGTTCCGAATGCATCTCTTCAACAAATACGACAAATTGGAAGTAATAATACACATCT
AAAATTGATGATTGAAAAAAATAACGAATCGTTAGATTGTGTAGGCTTTGGATTTGGGGATGCATATCATGAAATATCAC
CAAGTTGTGAAATTCATGTTTTAGGTGAGTTATCTATTAATGAATGGAATAATATAAGGAAACCACAGTTGTTTATTCAA
GATATCAAAATAGACGAATGGCAGCTATTTGATATCCGTTCTAGTAAACAGTTATCCAATACGTTAAAACAATTAAATAA
AGAAAAAGCAAGGTTAGTTCATTTTTCGAGTGAGGCGTTACACGACTTACCTATTGCAGAAGAGTGGAAAAGCAATTCAT
TGCATATAGCTGATATAGAAAATTATCGTTTTTCAGAGGAGACGCATTTAATATTATTAGATTTACCAACTGATGAAGAA
CAGTTAATTTCGTTAATTAAACTAGCTAAACCAACGCGAATCTATGCTAGCTTTTATCAAAGAGAAAATCACTTTTTCTC
CACAATTCCTACTCGTGACCATTTTAAGTGGTTTTACAGCTTGATTATGAAAAAAGGATCAATCGATTTAAATCGATATG
CAGAAGATATTGCAAAAACAAGAGGTTGGTCAAAAGAAACAGTAGATTTTATATCACAGGTGTTTTTTGAATTAGAATTT
GTTACAATAGACAATGGCTTTATTTCACTAAATAGTGGGTCCATGAAACGAGACTTAACAGAATCACGAACCTACCAAAA
GAAACAAAAGCAAATAGAGTTGGAAAATAAATTTTTATACTCAACGTATCACCAATTAAAAACGTGGTTTGATGAGCATG
TAAACGAACTACGAACCGTTTATTCATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.407

100

0.514