Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QPX68_RS15665 Genome accession   NZ_CP126696
Coordinates   3182217..3184532 (-) Length   771 a.a.
NCBI ID   WP_032876512.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GZY63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3177217..3189532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPX68_RS15655 cysI 3178491..3180206 (-) 1716 WP_032876519.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  QPX68_RS15660 - 3180234..3182042 (-) 1809 WP_032876515.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  QPX68_RS15665 helD 3182217..3184532 (-) 2316 WP_032876512.1 RNA polymerase recycling motor HelD Machinery gene
  QPX68_RS15670 - 3184724..3185332 (-) 609 WP_032876509.1 trimeric intracellular cation channel family protein -
  QPX68_RS15675 - 3185555..3186355 (+) 801 WP_032876506.1 zinc-dependent metalloprotease -
  QPX68_RS15680 - 3186389..3186808 (-) 420 WP_014305812.1 disulfide oxidoreductase -
  QPX68_RS15685 - 3186798..3187469 (-) 672 WP_032876501.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87886.98 Da        Isoelectric Point: 6.5244

>NTDB_id=768359 QPX68_RS15665 WP_032876512.1 3182217..3184532(-) (helD) [Bacillus amyloliquefaciens strain GZY63]
MNQQDKEWKEEQSRIDEVLKELRKKERSLETSSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFKEKGESSGERIYIGLTSLMDENNEHFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQNALSVRLAAIAYKASSAFQAMIDCYAGSLSVSGLICKQISFRGDILISNERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQKLKKQAADDEPAFDDHLREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGAAEKPDHWEGIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTEKARQEQLADTIRELRQKGWETVAVICKTAEEAKKVFQAVSAGSGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYKSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=768359 QPX68_RS15665 WP_032876512.1 3182217..3184532(-) (helD) [Bacillus amyloliquefaciens strain GZY63]
ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCAAGAATAGATGAAGTGCTGAAGGAGCTCCGCAAAAAAGAGCG
GTCTCTGGAAACATCATCGGGCGGATTAAAGCAGGATATTGTGGGCTTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGATGCCCACGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAA
AGAAAAAGGGGAGTCCTCTGGCGAGCGGATTTATATCGGGCTGACTTCTTTAATGGATGAAAACAATGAGCATTTTCTCA
TTTATGATTGGCGCGCGCCCATCTCGTCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAA
ACGATAGAAGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATTGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
TCCGAACATTTTGTTCAACAGTTATGTGTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGAACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCATCAGCTTTTCAGGCCATGATTGATTG
TTATGCCGGGTCGCTTTCAGTCTCCGGTCTGATATGTAAACAGATCAGTTTCCGGGGAGACATCCTGATTTCAAATGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCACTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTGCTGCAGGAGAGTGAGCTGCTTGATAAGGAAGA
TTATGCTGAGGTTTATCAAAAACTTAAGAAGCAAGCGGCGGATGACGAACCTGCATTTGACGACCACCTGCGCGAACAGC
GCCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGCTGAAAAGCCCGATCATTGGGAGGGCATCGGCGCTTTGAC
CAGAAACGCATTTGCAGAACGGTCACTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
AGCATCTTCCCAGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAACGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAAAGCGCGGCAGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGAGGAAGCCAAAAAAGTGTTTCAGGCAGTCAGCGCCGGGAGCGGTGTGCGTTTGATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGACGCCTCTGCTGCCCAGTACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATCTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

68.312

99.87

0.682