Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   O1A01_RS18760 Genome accession   NZ_CP115153
Coordinates   3571539..3573923 (-) Length   794 a.a.
NCBI ID   WP_270064726.1    Uniprot ID   -
Organism   Sutcliffiella sp. NC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3566539..3578923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1A01_RS18730 (O1A01_18730) - 3567356..3568408 (-) 1053 WP_270064724.1 AI-2E family transporter -
  O1A01_RS18735 (O1A01_18735) - 3568651..3570009 (-) 1359 WP_270064725.1 aspartate aminotransferase family protein -
  O1A01_RS18740 (O1A01_18740) - 3570045..3570272 (-) 228 WP_066414882.1 hypothetical protein -
  O1A01_RS18745 (O1A01_18745) - 3570496..3570651 (-) 156 WP_084380356.1 YrzQ family protein -
  O1A01_RS18750 (O1A01_18750) - 3570672..3570866 (-) 195 WP_066414884.1 hypothetical protein -
  O1A01_RS18755 (O1A01_18755) - 3570888..3571364 (-) 477 WP_066414886.1 PRC-barrel domain-containing protein -
  O1A01_RS18760 (O1A01_18760) recD2 3571539..3573923 (-) 2385 WP_270064726.1 ATP-dependent RecD-like DNA helicase Machinery gene
  O1A01_RS18765 (O1A01_18765) - 3573943..3574599 (-) 657 WP_270064727.1 tetratricopeptide repeat protein -
  O1A01_RS18770 (O1A01_18770) mnmA 3574770..3575846 (-) 1077 WP_270066437.1 tRNA 2-thiouridine(34) synthase MnmA -
  O1A01_RS18775 (O1A01_18775) - 3575869..3577047 (-) 1179 WP_270064728.1 cysteine desulfurase family protein -
  O1A01_RS18780 (O1A01_18780) - 3577093..3577509 (-) 417 WP_066414900.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 794 a.a.        Molecular weight: 89491.30 Da        Isoelectric Point: 5.1119

>NTDB_id=768359 O1A01_RS18760 WP_270064726.1 3571539..3573923(-) (recD2) [Sutcliffiella sp. NC1]
MHQNSLDLFQENELYMKGTHLVTIFHNEDNLYSVVRIKVSETNVPYEEKEAIVTGYFPKIHEDETYTFFGALKDHPRFGL
QFHVEHFRKELPQTKQGVIQYLSSDIFTGIGKKTAENIVNAIGENAISKILENPSILAEVPKLSTEKAKDVYKTLMEHQG
LERVMIALSQLGFGPQLTMKIYQTYKDETLQIIQTNPYQLVEDVEGIGFSRADELGKQIGITGTDPSRIRAGCMYTLEQV
SLQEGHCFVTKEQLMKSVFSLLNSSKSEKVTLDDISREILHAIEEGKIMGEDERIYLPSLYFSEKGLVKNIKRILEQTQY
EEQFPESEFLKSLGRLEERLKVQYAPSQKQAIQKALLSPMMLLTGGPGTGKTTVIKGIVELYADLHGCSLDPKDYDKDDP
FPILLVAPTGRASKRMSEATGLPSLTIHRLLGWNGSEGFQFDEENPVPGKLLIVDEVSMVDIWLAHQLFKSLPNDIQVIL
VGDEDQLPSVGPGQVLKDLLASKAIPTVALTDIYRQEDGSSIIDLAHDMKNGMIPRDISTPKVDRSFIKCQSGHILDVVK
KVCANAMKKGYTARDIQVLAPMYRGNAGIDKLNETLQELFNPKSEQRREIAFGNVVYRTGDKVLQLVNQPDSNVFNGDMG
EIVSIFYAKENTEKQDMVIVSFDGNEVTYTKQDLGQITHAYCCSIHKSQGSEFPIVVLPVVKSYYRMLRRNLLYTAVTRS
KRFLILCGEEEALQIGVNRTDDQLRQTSLTERLKSDATHAQLEDEDDELLKEVPFAKDALIGMEGISPYDFMEK

Nucleotide


Download         Length: 2385 bp        

>NTDB_id=768359 O1A01_RS18760 WP_270064726.1 3571539..3573923(-) (recD2) [Sutcliffiella sp. NC1]
ATGCACCAAAACTCCCTTGATTTGTTTCAAGAAAATGAACTTTATATGAAAGGAACACATCTCGTTACAATCTTTCATAA
CGAGGATAATCTGTATTCGGTTGTTAGAATAAAGGTGAGCGAGACGAATGTTCCTTATGAGGAAAAAGAAGCAATTGTAA
CTGGATATTTCCCAAAAATTCATGAAGATGAAACGTATACTTTTTTTGGTGCATTAAAAGATCACCCTCGTTTTGGATTA
CAGTTTCATGTTGAGCATTTTCGTAAAGAATTACCGCAAACAAAACAGGGGGTTATCCAATATTTATCTAGTGACATATT
TACCGGCATTGGGAAAAAGACTGCAGAAAATATAGTGAATGCTATAGGTGAAAATGCAATCTCAAAAATATTGGAAAACC
CTTCTATTTTAGCTGAAGTTCCTAAGTTGTCTACTGAAAAGGCGAAAGATGTGTATAAAACATTAATGGAACATCAAGGC
CTAGAAAGAGTAATGATTGCCCTTTCACAGCTTGGATTTGGACCGCAACTTACAATGAAAATTTATCAAACATATAAAGA
TGAAACACTCCAAATTATTCAAACGAATCCATATCAATTAGTAGAGGATGTGGAAGGAATTGGTTTTAGTCGTGCGGATG
AGCTAGGAAAACAAATAGGTATTACTGGCACAGATCCAAGTCGTATTAGAGCTGGTTGTATGTATACGCTTGAACAAGTT
TCACTTCAAGAAGGACATTGTTTCGTAACGAAGGAACAGTTAATGAAAAGTGTTTTTTCGTTACTAAATAGTTCCAAATC
AGAAAAAGTAACATTAGACGACATTTCTCGGGAAATATTGCATGCGATAGAAGAGGGGAAAATAATGGGGGAAGATGAAC
GTATTTATCTACCTTCGTTATATTTCTCTGAAAAAGGGTTAGTAAAAAATATTAAGCGAATATTGGAGCAAACTCAGTAT
GAAGAGCAATTTCCTGAATCGGAATTTTTAAAATCACTTGGTCGGTTAGAAGAAAGATTAAAGGTTCAATATGCTCCTTC
GCAGAAACAAGCAATACAAAAAGCGTTATTGTCCCCAATGATGCTATTGACTGGTGGACCAGGTACAGGTAAAACAACTG
TTATAAAGGGTATAGTAGAGCTATATGCTGATTTACATGGTTGCTCGCTCGACCCAAAGGATTATGATAAAGATGATCCT
TTTCCGATTCTTTTAGTAGCACCAACAGGACGTGCTTCTAAACGGATGAGTGAAGCAACAGGATTACCTTCCTTAACTAT
TCATCGCCTTCTCGGATGGAATGGCTCTGAAGGATTTCAATTTGATGAAGAAAATCCAGTTCCTGGTAAATTGTTAATCG
TTGATGAAGTATCGATGGTAGATATTTGGCTTGCTCATCAGCTTTTTAAATCTTTACCGAACGATATTCAAGTTATCTTA
GTTGGTGACGAAGATCAGTTACCTTCAGTTGGTCCCGGACAAGTTTTAAAAGATTTGTTAGCTTCAAAGGCAATTCCAAC
TGTTGCGTTAACTGACATATATCGTCAAGAAGATGGATCTTCCATTATTGACCTTGCACATGATATGAAAAACGGGATGA
TCCCACGAGATATCTCGACACCTAAAGTAGACCGTTCTTTTATAAAGTGTCAATCTGGACATATATTAGATGTTGTAAAG
AAAGTGTGTGCCAACGCGATGAAAAAAGGATATACGGCACGTGATATTCAAGTGTTAGCACCGATGTACCGAGGTAACGC
TGGAATCGATAAATTAAACGAGACTCTTCAAGAATTGTTTAATCCGAAGTCAGAGCAACGACGTGAAATAGCGTTTGGTA
ATGTAGTTTATCGGACAGGTGATAAAGTATTACAACTAGTTAATCAACCAGATAGTAATGTTTTTAATGGCGATATGGGA
GAGATTGTTTCCATTTTTTATGCTAAAGAAAACACCGAAAAACAAGATATGGTGATCGTTTCTTTTGACGGAAACGAAGT
AACGTATACGAAACAAGACTTGGGACAGATAACTCATGCATATTGTTGCTCTATTCATAAATCACAAGGAAGCGAATTTC
CTATTGTCGTCCTCCCTGTTGTAAAGAGTTATTACCGAATGCTTCGTCGTAATTTACTTTACACTGCTGTGACACGTAGT
AAACGATTTTTAATTCTTTGTGGAGAAGAAGAAGCGTTGCAAATTGGAGTGAATCGAACAGACGATCAACTTCGCCAAAC
TTCCTTAACGGAAAGACTAAAGAGTGATGCAACACATGCTCAATTAGAGGATGAAGATGATGAACTATTAAAAGAAGTGC
CATTTGCAAAAGATGCATTAATTGGGATGGAAGGTATATCTCCATACGATTTCATGGAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.625

100

0.641