Detailed information NTG0768336

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: QPX68_RS12625
• Genome accession: NZ_CP126696
• Coordinates: 2601498..2602766 (+)
• Length: 422 a.a.
• NCBI ID: WP_029326053.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GZY63
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2596498..2607766

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QPX68_RS12605	-	2597869..2598519 (-)	651	WP_032873859.1	tetratricopeptide repeat protein	-
QPX68_RS12610	mnmA	2598577..2599692 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
QPX68_RS12615	-	2599729..2600868 (-)	1140	WP_032873857.1	cysteine desulfurase family protein	-
QPX68_RS12620	cymR	2600887..2601303 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
QPX68_RS12625	rarA	2601498..2602766 (+)	1269	WP_029326053.1	replication-associated recombination protein A	Machinery gene
QPX68_RS12630	-	2602881..2603645 (-)	765	WP_032873855.1	tRNA threonylcarbamoyladenosine dehydratase	-
QPX68_RS12640	aspS	2603971..2605749 (-)	1779	WP_032873853.1	aspartate--tRNA ligase	-
QPX68_RS12645	hisS	2605764..2607038 (-)	1275	WP_032873851.1	histidine--tRNA ligase	-
QPX68_RS12650	-	2607395..2607565 (-)	171	WP_087920774.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46646.54 Da
• Isoelectric Point: 8.5446

>NTDB_id=768336 QPX68_RS12625 WP_029326053.1 2601498..2602766(+) (rarA) [Bacillus amyloliquefaciens strain GZY63]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTVRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=768336 QPX68_RS12625 WP_029326053.1 2601498..2602766(+) (rarA) [Bacillus amyloliquefaciens strain GZY63]
ATGAAACCACTGGCGTATCGGATGCGGCCTGCCAATATTGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACATCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCTTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGGGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGG
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGAACGGGTAA
AATCGGCGATGTGCCGAAACATCTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905