Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QPM06_RS23640 Genome accession   NZ_CP126695
Coordinates   5104027..5104452 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PAO1-UW     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5099027..5109452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPM06_RS23625 (QPM06_23625) pilX 5099597..5100184 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QPM06_RS23630 (QPM06_23630) pilY1 5100196..5103681 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  QPM06_RS23635 (QPM06_23635) pilY2 5103683..5104030 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QPM06_RS23640 (QPM06_23640) comF 5104027..5104452 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QPM06_RS23645 (QPM06_23645) ispH 5104499..5105443 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QPM06_RS23650 (QPM06_23650) fkpB 5105529..5105969 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QPM06_RS23655 (QPM06_23655) lspA 5105962..5106471 (-) 510 WP_003112823.1 signal peptidase II -
  QPM06_RS23660 (QPM06_23660) ileS 5106464..5109295 (-) 2832 WP_003112822.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=768202 QPM06_RS23640 WP_003094721.1 5104027..5104452(+) (comF) [Pseudomonas aeruginosa strain PAO1-UW]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=768202 QPM06_RS23640 WP_003094721.1 5104027..5104452(+) (comF) [Pseudomonas aeruginosa strain PAO1-UW]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383