Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QPL68_RS03450 Genome accession   NZ_CP126629
Coordinates   705541..706314 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 35-42     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 700541..711314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPL68_RS03415 (QPL68_03415) - 700785..701555 (-) 771 WP_000473705.1 isoprenyl transferase -
  QPL68_RS03420 (QPL68_03420) frr 701928..702482 (-) 555 WP_001280006.1 ribosome recycling factor -
  QPL68_RS03425 (QPL68_03425) pyrH 702501..703223 (-) 723 WP_000057330.1 UMP kinase -
  QPL68_RS03430 (QPL68_03430) tsf 703360..704241 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QPL68_RS03435 (QPL68_03435) - 704276..704389 (-) 114 WP_001789890.1 hypothetical protein -
  QPL68_RS03440 (QPL68_03440) rpsB 704423..705199 (-) 777 WP_063651283.1 30S ribosomal protein S2 -
  QPL68_RS03445 (QPL68_03445) - 705398..705490 (-) 93 WP_259378595.1 hypothetical protein -
  QPL68_RS03450 (QPL68_03450) codY 705541..706314 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QPL68_RS03455 (QPL68_03455) hslU 706339..707742 (-) 1404 WP_063651285.1 ATP-dependent protease ATPase subunit HslU -
  QPL68_RS03460 (QPL68_03460) hslV 707808..708353 (-) 546 WP_072527682.1 ATP-dependent protease subunit HslV -
  QPL68_RS03465 (QPL68_03465) xerC 708350..709246 (-) 897 WP_001015604.1 tyrosine recombinase XerC -
  QPL68_RS03470 (QPL68_03470) trmFO 709664..710971 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=767906 QPL68_RS03450 WP_000055337.1 705541..706314(-) (codY) [Staphylococcus aureus strain 35-42]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=767906 QPL68_RS03450 WP_000055337.1 705541..706314(-) (codY) [Staphylococcus aureus strain 35-42]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428