Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   F0313_RS15810 Genome accession   NZ_CP126600
Coordinates   3294535..3295299 (-) Length   254 a.a.
NCBI ID   WP_149488426.1    Uniprot ID   -
Organism   Escherichia coli strain Ec1119     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3289535..3300299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0313_RS15785 (F0313_015760) yhhJ 3291391..3292515 (+) 1125 WP_001216257.1 ABC transporter permease -
  F0313_RS15790 (F0313_015765) - 3292619..3292849 (+) 231 WP_042014162.1 type II toxin-antitoxin system HicA family toxin -
  F0313_RS15795 (F0313_015770) - 3292846..3293205 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  F0313_RS15800 (F0313_015775) nikR 3293325..3293726 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  F0313_RS15805 (F0313_015780) nikE 3293732..3294538 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  F0313_RS15810 (F0313_015785) amiE 3294535..3295299 (-) 765 WP_149488426.1 nickel import ATP-binding protein NikD Regulator
  F0313_RS15815 (F0313_015790) nikC 3295299..3296132 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  F0313_RS15820 (F0313_015795) nikB 3296129..3297073 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  F0313_RS15825 (F0313_015800) nikA 3297073..3298647 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  F0313_RS15830 (F0313_015805) acpT 3298758..3299345 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26801.36 Da        Isoelectric Point: 6.5992

>NTDB_id=767682 F0313_RS15810 WP_149488426.1 3294535..3295299(-) (amiE) [Escherichia coli strain Ec1119]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAVAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=767682 F0313_RS15810 WP_149488426.1 3294535..3295299(-) (amiE) [Escherichia coli strain Ec1119]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGGTGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398