Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   O6U12_RS08550 Genome accession   NZ_CP114899
Coordinates   1564168..1564947 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559168..1569947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6U12_RS08520 (O6U12_08520) fliH 1559186..1559938 (-) 753 WP_026113606.1 flagellar assembly protein FliH -
  O6U12_RS08525 (O6U12_08525) fliG 1559931..1560947 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  O6U12_RS08530 (O6U12_08530) fliF 1560960..1562570 (-) 1611 WP_269767427.1 flagellar basal-body MS-ring/collar protein FliF -
  O6U12_RS08535 (O6U12_08535) fliE 1562616..1562936 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  O6U12_RS08540 (O6U12_08540) flgC 1562947..1563399 (-) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  O6U12_RS08545 (O6U12_08545) flgB 1563399..1563788 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  O6U12_RS08550 (O6U12_08550) codY 1564168..1564947 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  O6U12_RS08555 (O6U12_08555) hslU 1564987..1566390 (-) 1404 WP_041335959.1 HslU--HslV peptidase ATPase subunit -
  O6U12_RS08560 (O6U12_08560) clpQ 1566407..1566952 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  O6U12_RS08565 (O6U12_08565) xerC 1566965..1567879 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  O6U12_RS08570 (O6U12_08570) trmFO 1567947..1569254 (-) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=767585 O6U12_RS08550 WP_003220850.1 1564168..1564947(-) (codY) [Bacillus subtilis strain]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=767585 O6U12_RS08550 WP_003220850.1 1564168..1564947(-) (codY) [Bacillus subtilis strain]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467