Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O6106_RS07885 Genome accession   NZ_CP114895
Coordinates   1626950..1627579 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CM56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621950..1632579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6106_RS07865 ycbZ 1622351..1624111 (-) 1761 WP_000156518.1 Lon protease family protein -
  O6106_RS07870 matP 1624297..1624749 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  O6106_RS07875 ompA 1624825..1625865 (-) 1041 WP_000750416.1 porin OmpA -
  O6106_RS07880 sulA 1626222..1626731 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  O6106_RS07885 sxy/tfoX 1626950..1627579 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  O6106_RS07890 yccS 1627542..1629704 (-) 2163 WP_000875061.1 YccS family putative transporter -
  O6106_RS07895 yccF 1629714..1630160 (-) 447 WP_001261235.1 YccF domain-containing protein -
  O6106_RS07900 helD 1630283..1632337 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=767518 O6106_RS07885 WP_000839153.1 1626950..1627579(+) (sxy/tfoX) [Escherichia coli strain CM56]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=767518 O6106_RS07885 WP_000839153.1 1626950..1627579(+) (sxy/tfoX) [Escherichia coli strain CM56]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1