Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   O7776_RS13490 Genome accession   NZ_CP114887
Coordinates   2747476..2749974 (-) Length   832 a.a.
NCBI ID   WP_274307552.1    Uniprot ID   -
Organism   Solibacillus daqui strain ZS111008 isolate Daqu     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2742476..2754974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O7776_RS13480 - 2744938..2746086 (-) 1149 WP_274307550.1 MFS transporter -
  O7776_RS13485 yeiL 2746193..2746861 (+) 669 WP_274307551.1 transcriptional regulator YeiL -
  O7776_RS13490 recD2 2747476..2749974 (-) 2499 WP_274307552.1 ATP-dependent RecD-like DNA helicase Machinery gene
  O7776_RS13495 hisA 2750138..2750890 (+) 753 WP_274307553.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  O7776_RS13500 - 2750958..2751851 (-) 894 WP_274307554.1 manganese catalase family protein -
  O7776_RS13505 - 2751906..2752118 (-) 213 WP_241369551.1 YuzF family protein -
  O7776_RS13510 dtd 2752192..2752638 (-) 447 WP_274307555.1 D-aminoacyl-tRNA deacylase -
  O7776_RS13515 - 2752657..2754852 (-) 2196 WP_274307556.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 832 a.a.        Molecular weight: 92609.34 Da        Isoelectric Point: 4.8838

>NTDB_id=767400 O7776_RS13490 WP_274307552.1 2747476..2749974(-) (recD2) [Solibacillus daqui strain ZS111008 isolate Daqu]
MAENLDLFELNKNFILGRPIVTIFHNATNMYSIVRVKIQETNIQFEEKEIIVVGYFPKLAEDELYRFKGQMKTHPKYGVQ
FQIDTFEKEVPTTEQGIVHYLSSDLFTGIGRKTAETIVEKLGLDALTKILEDPSALDAVPRLSVEKKLHIRQTIEENLGL
ERVMVRLNEWGFGPQLGMKIYQAYREATISLLTENPYRLIEEVDGVGFIRADELGAKLGITGNHPDRIKAAIFHVLTNAA
LSEGHVYLEAEIVLPLVKAMLEQSQRIEIPYEAISQAAIEMREESKICGEETRMYLPTLYFSEVGIASKIIELKEKNKLA
QNFSRDEIRKAIGDIEEQYEVTYAPTQAQAIETALNSAVMILTGGPGTGKTTVVRGLVEVYAELHGLSLNPKTYVEKDEP
FPIVLAAPTGRAAKRLAESTGLPAMTIHRLLGFNGQEKDEETGREVVGRLIIIDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLGSQQIPIVELTDVYRQAEGSTIIEMAHQIKKGIVPDSLTVKTSDRSFIQAAANQVTSVVTQ
VVKGAMSKGQAIRDIQVLAPMYKGPAGIDNLNKEIQELVNPNDGTRKELVFGDTIYRIGDKVLQLVNQPENNVFNGDMGE
VIAIIRAKETVEKQDLLVVSYDGIEVTYQRPDLNQITLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLAKGLATTDDLMRFTTLKARLNPTLTTEVIEAVSQEKPSSIMELKQEQTAIQSTTEQLGLLNTAESHKI
GEVLPSNLTTETAPYIHPLIGMDGISPYDYND

Nucleotide


Download         Length: 2499 bp        

>NTDB_id=767400 O7776_RS13490 WP_274307552.1 2747476..2749974(-) (recD2) [Solibacillus daqui strain ZS111008 isolate Daqu]
ATGGCGGAAAATCTAGATTTGTTCGAGCTAAATAAAAACTTTATTTTAGGTCGCCCAATAGTAACAATTTTTCATAATGC
AACGAATATGTACTCCATTGTTCGTGTCAAAATTCAAGAAACAAATATTCAATTTGAAGAAAAAGAAATTATTGTTGTTG
GCTATTTTCCAAAATTAGCTGAAGATGAGCTCTACCGTTTTAAAGGGCAAATGAAAACACACCCAAAATATGGGGTACAA
TTTCAAATTGATACCTTTGAAAAAGAAGTGCCGACAACAGAGCAAGGTATTGTGCATTATTTATCGAGTGATTTATTTAC
AGGTATTGGACGCAAAACAGCAGAGACGATTGTCGAAAAGCTTGGCCTCGATGCATTAACGAAAATTTTAGAAGACCCAT
CAGCGCTCGATGCGGTACCACGACTTTCAGTAGAAAAAAAATTGCATATTCGTCAGACGATAGAAGAAAATCTAGGTTTA
GAGCGTGTAATGGTACGTCTCAATGAATGGGGATTCGGCCCACAGCTAGGGATGAAAATTTATCAAGCTTATCGAGAGGC
AACAATTTCGCTACTTACTGAAAATCCGTACCGTCTTATTGAAGAAGTAGACGGGGTGGGTTTTATACGCGCGGATGAAC
TTGGTGCGAAGCTTGGCATTACTGGCAATCATCCAGACCGGATAAAAGCGGCGATTTTTCATGTGCTAACAAATGCGGCT
TTATCGGAGGGGCATGTTTATTTGGAAGCAGAAATTGTGCTTCCTCTAGTAAAGGCAATGCTTGAACAAAGTCAGCGTAT
TGAAATTCCGTATGAGGCGATTTCACAAGCGGCAATTGAAATGCGTGAAGAGTCGAAAATTTGCGGTGAAGAAACACGCA
TGTATTTACCTACGCTCTATTTCAGTGAAGTAGGAATCGCGAGTAAAATTATTGAGCTAAAAGAAAAAAATAAGTTAGCA
CAAAATTTTTCGCGTGACGAAATTCGAAAAGCAATTGGCGATATTGAAGAGCAATATGAGGTGACATATGCTCCAACACA
GGCACAAGCAATTGAAACGGCACTTAATTCAGCCGTCATGATATTAACGGGCGGACCAGGTACAGGGAAGACGACCGTTG
TGCGCGGTTTAGTGGAAGTGTATGCAGAACTACATGGTTTATCTTTAAATCCCAAAACATATGTAGAAAAAGACGAGCCA
TTTCCGATCGTACTTGCAGCTCCAACAGGACGTGCAGCAAAACGTTTAGCCGAATCAACAGGATTACCTGCGATGACGAT
TCATCGCTTATTAGGTTTTAACGGACAGGAAAAAGATGAAGAAACAGGACGTGAGGTTGTTGGGCGGTTAATTATTATCG
ATGAAATGTCGATGGTTGACACGTGGTTGGCACATCAACTACTAAAAGCGTTGCATGAAGATGTACAAGTAGTTTTTGTT
GGTGACCAAGACCAGCTACCTCCTGTAGGACCAGGGCAAGTATTAAAAGACTTGCTCGGTTCGCAGCAAATTCCTATAGT
TGAATTAACCGATGTTTATCGTCAAGCGGAAGGCTCAACAATTATTGAAATGGCTCATCAAATTAAAAAGGGCATTGTAC
CAGATAGTTTAACGGTGAAAACATCCGATCGCTCTTTTATTCAAGCAGCTGCTAACCAAGTAACGAGTGTTGTCACACAA
GTAGTGAAGGGAGCCATGTCAAAAGGTCAGGCAATTCGTGACATTCAAGTGCTCGCGCCAATGTATAAAGGGCCTGCAGG
TATTGATAACTTAAATAAAGAAATTCAAGAGCTTGTTAATCCGAATGATGGCACACGAAAAGAACTCGTCTTTGGGGATA
CTATTTACCGTATTGGTGATAAAGTGTTACAACTAGTTAATCAACCTGAAAACAACGTATTTAATGGGGATATGGGTGAA
GTTATTGCAATCATTCGAGCGAAGGAAACAGTTGAAAAGCAGGATTTACTTGTTGTTTCTTATGATGGCATTGAAGTAAC
GTATCAGCGACCAGATTTAAATCAAATCACCCTTGCTTACTGCTGCTCAATCCATAAATCACAAGGCTCAGAATTCCAAA
CTGTTATTATGCCAGTTGTTCGTGGCTATTCGAAAATGCTACGACGAAATTTGCTGTATACTGGTATTACACGTGCAAAA
AACTTCTTAATTTTATGTGGAGAACCAGATGTGCTGGCTAAAGGATTAGCAACAACAGATGATTTAATGCGTTTTACAAC
ATTAAAGGCACGTTTAAATCCAACATTAACGACAGAAGTTATCGAAGCGGTGTCACAAGAAAAGCCCTCATCAATTATGG
AACTTAAACAGGAACAAACAGCAATACAATCTACCACAGAACAGTTAGGATTATTAAATACTGCAGAATCACATAAAATT
GGTGAAGTATTACCAAGCAATTTAACAACGGAAACAGCGCCCTATATTCATCCGTTGATTGGTATGGACGGCATTTCACC
GTATGATTACAATGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-549)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-651)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.394

92.067

0.492