Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   O6R09_RS03300 Genome accession   NZ_CP114883
Coordinates   618772..619647 (+) Length   291 a.a.
NCBI ID   WP_154454298.1    Uniprot ID   -
Organism   Streptococcus alactolyticus strain LGM     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 613772..624647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6R09_RS03275 (O6R09_03275) - 614410..615069 (+) 660 WP_000802831.1 dihydrofolate reductase family protein -
  O6R09_RS03280 (O6R09_03280) - 615946..616647 (-) 702 Protein_579 ISL3 family transposase -
  O6R09_RS03285 (O6R09_03285) - 616922..617158 (+) 237 WP_154454301.1 DUF1146 family protein -
  O6R09_RS03290 (O6R09_03290) murA 617222..618496 (+) 1275 WP_235281025.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  O6R09_RS03295 (O6R09_03295) - 618497..618688 (+) 192 WP_154454299.1 DNA-directed RNA polymerase subunit beta -
  O6R09_RS03300 (O6R09_03300) endA 618772..619647 (+) 876 WP_154454298.1 DNA/RNA non-specific endonuclease Machinery gene
  O6R09_RS03305 (O6R09_03305) pheS 619925..620971 (+) 1047 WP_168260941.1 phenylalanine--tRNA ligase subunit alpha -
  O6R09_RS03310 (O6R09_03310) pheT 621100..623505 (+) 2406 WP_269725770.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 31245.50 Da        Isoelectric Point: 9.4746

>NTDB_id=767331 O6R09_RS03300 WP_154454298.1 618772..619647(+) (endA) [Streptococcus alactolyticus strain LGM]
MAKKSKTSKQFKSIIAVLVALIGIGTGWVTTSESGEQSLQQVVSLVTGQETSASSVTSNQSKSTDGAPSQALAETVLTDS
VKEQLGNKLEWNGAGAYIVNQNKTSLNAKVSSKPYVNNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWKPAG
WHQLQHLSGTYHHAVDRGHLLGYALVGGLKGFDASTSNPANVATQTAWANEANSEDSTGQNYYESQVRKALDQNKRVRYR
VTLIYDGDNILSSGTHLEAKSSDGSLEFNVFIPNVQSGLTFNYYSGEVSVN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=767331 O6R09_RS03300 WP_154454298.1 618772..619647(+) (endA) [Streptococcus alactolyticus strain LGM]
ATGGCGAAAAAATCAAAAACATCAAAACAGTTTAAATCCATTATTGCAGTACTAGTTGCCTTAATTGGTATCGGGACGGG
TTGGGTAACCACCTCAGAATCAGGCGAGCAATCCTTGCAGCAGGTGGTTTCCTTGGTCACTGGGCAAGAAACGTCTGCCT
CATCTGTCACGTCTAACCAATCCAAATCAACAGACGGTGCCCCAAGTCAAGCCTTAGCAGAAACGGTTTTAACTGATAGC
GTCAAGGAACAGTTGGGCAACAAGCTTGAGTGGAATGGGGCTGGAGCTTATATTGTGAATCAAAACAAGACGTCTTTAAA
TGCCAAGGTATCGAGTAAGCCTTATGTCAACAACAAAACCAAAACCGTTCAAGGGCAAACGGTTCCGACGGTTGCGAATG
CCTTGCTAAGCAAATCCACACGCCAATACAAGAGCCGTGAGGAAACTGGCAATGGCTCAACTTCTTGGAAACCAGCTGGC
TGGCACCAATTGCAACACTTGTCAGGAACTTATCACCATGCCGTTGATCGCGGGCATTTGCTGGGCTATGCTTTGGTTGG
TGGTCTAAAAGGATTTGATGCCTCAACCAGCAATCCTGCTAATGTGGCAACGCAAACAGCTTGGGCAAATGAAGCCAACT
CAGAAGACTCAACAGGTCAGAATTACTATGAATCACAGGTTCGCAAGGCTTTGGATCAAAACAAACGTGTGCGTTATCGC
GTGACCTTAATCTATGATGGCGACAATATTCTCTCAAGTGGTACGCATTTGGAGGCAAAATCATCAGACGGTAGTTTGGA
ATTTAATGTCTTTATTCCAAATGTCCAAAGCGGCCTGACTTTCAATTACTATTCTGGTGAGGTCAGTGTCAATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

71.552

79.725

0.57
  endA Streptococcus pneumoniae D39

71.552

79.725

0.57
  endA Streptococcus pneumoniae R6

71.552

79.725

0.57
  endA Streptococcus pneumoniae TIGR4

71.552

79.725

0.57