Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QNK06_RS06160 Genome accession   NZ_CP126097
Coordinates   1182189..1183106 (+) Length   305 a.a.
NCBI ID   WP_187002182.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177189..1188106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS06145 (QNK06_06145) trpS 1177770..1178762 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  QNK06_RS06150 (QNK06_06150) oppA 1179506..1181143 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  QNK06_RS06155 (QNK06_06155) oppB 1181250..1182185 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  QNK06_RS06160 (QNK06_06160) amiD 1182189..1183106 (+) 918 WP_187002182.1 oligopeptide ABC transporter permease OppC Regulator
  QNK06_RS06165 (QNK06_06165) oppD 1183111..1184187 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  QNK06_RS06170 (QNK06_06170) oppF 1184189..1185106 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  QNK06_RS06175 (QNK06_06175) yjbB 1185213..1186430 (+) 1218 WP_283934460.1 MFS transporter -
  QNK06_RS06180 (QNK06_06180) yjbC 1186594..1187172 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  QNK06_RS06185 (QNK06_06185) spx 1187353..1187748 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33653.18 Da        Isoelectric Point: 10.2873

>NTDB_id=766937 QNK06_RS06160 WP_187002182.1 1182189..1183106(+) (amiD) [Bacillus subtilis strain KF24]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=766937 QNK06_RS06160 WP_187002182.1 1182189..1183106(+) (amiD) [Bacillus subtilis strain KF24]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364