Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   O2U03_RS06925 Genome accession   NZ_CP114512
Coordinates   1338420..1339250 (-) Length   276 a.a.
NCBI ID   WP_283474285.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S39     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1333420..1344250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U03_RS06905 (O2U03_06905) dhaQ 1334549..1335505 (+) 957 WP_081512818.1 DhaKLM operon coactivator DhaQ -
  O2U03_RS06910 (O2U03_06910) dhaS 1335506..1336030 (-) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  O2U03_RS06915 (O2U03_06915) brnQ 1336176..1337558 (-) 1383 WP_283474288.1 branched-chain amino acid transport system II carrier protein -
  O2U03_RS06920 (O2U03_06920) - 1338098..1338364 (+) 267 WP_003701014.1 hypothetical protein -
  O2U03_RS06925 (O2U03_06925) endA 1338420..1339250 (-) 831 WP_283474285.1 DNA/RNA non-specific endonuclease Machinery gene
  O2U03_RS06930 (O2U03_06930) - 1339619..1340221 (+) 603 WP_283474283.1 nitroreductase family protein -
  O2U03_RS06935 (O2U03_06935) - 1340276..1342207 (-) 1932 WP_283474281.1 heavy metal translocating P-type ATPase -
  O2U03_RS06940 (O2U03_06940) - 1342330..1342671 (+) 342 WP_003701009.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30426.73 Da        Isoelectric Point: 10.4970

>NTDB_id=766173 O2U03_RS06925 WP_283474285.1 1338420..1339250(-) (endA) [Ligilactobacillus salivarius strain S39]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKSLDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=766173 O2U03_RS06925 WP_283474285.1 1338420..1339250(-) (endA) [Ligilactobacillus salivarius strain S39]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGACTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGGCATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AATCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACCGGACAAGCTACTAGAAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.09

80.797

0.486
  endA Streptococcus pneumoniae D39

60.09

80.797

0.486
  endA Streptococcus pneumoniae R6

60.09

80.797

0.486
  endA Streptococcus pneumoniae TIGR4

60.09

80.797

0.486