Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   O2U02_RS00520 Genome accession   NZ_CP114509
Coordinates   93529..94359 (+) Length   276 a.a.
NCBI ID   WP_283474285.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain S35     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 88529..99359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2U02_RS00505 (O2U02_00505) - 90108..90422 (-) 315 WP_003704272.1 metalloregulator ArsR/SmtB family transcription factor -
  O2U02_RS00510 (O2U02_00510) - 90572..92503 (+) 1932 WP_283474281.1 heavy metal translocating P-type ATPase -
  O2U02_RS00515 (O2U02_00515) - 92558..93160 (-) 603 WP_283474283.1 nitroreductase family protein -
  O2U02_RS00520 (O2U02_00520) endA 93529..94359 (+) 831 WP_283474285.1 DNA/RNA non-specific endonuclease Machinery gene
  O2U02_RS00525 (O2U02_00525) - 94415..94681 (-) 267 WP_003701014.1 hypothetical protein -
  O2U02_RS00530 (O2U02_00530) brnQ 95221..96603 (+) 1383 WP_283474288.1 branched-chain amino acid transport system II carrier protein -
  O2U02_RS00535 (O2U02_00535) dhaS 96749..97273 (+) 525 WP_003704309.1 dihydroxyacetone kinase transcriptional activator DhaS -
  O2U02_RS00540 (O2U02_00540) dhaQ 97274..98230 (-) 957 WP_081512818.1 DhaKLM operon coactivator DhaQ -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30426.73 Da        Isoelectric Point: 10.4970

>NTDB_id=766130 O2U02_RS00520 WP_283474285.1 93529..94359(+) (endA) [Ligilactobacillus salivarius strain S35]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKSLDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=766130 O2U02_RS00520 WP_283474285.1 93529..94359(+) (endA) [Ligilactobacillus salivarius strain S35]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGACTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGCCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGGCAGGTACAAAATTTGCCTGGTAGATTCAAGCATGCTTAT
GATAGAGGGCATTTATTAGCATATGCGCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AATCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACCGGACAAGCTACTAGAAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.09

80.797

0.486
  endA Streptococcus pneumoniae D39

60.09

80.797

0.486
  endA Streptococcus pneumoniae R6

60.09

80.797

0.486
  endA Streptococcus pneumoniae TIGR4

60.09

80.797

0.486