Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QIH96_RS26105 Genome accession   NZ_CP126005
Coordinates   5636169..5637221 (-) Length   350 a.a.
NCBI ID   WP_304490024.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain S04E-Bj     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5631169..5642221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIH96_RS26085 (QIH96_26080) - 5632079..5632293 (+) 215 Protein_5192 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  QIH96_RS26090 (QIH96_26085) - 5632330..5634846 (+) 2517 WP_304494211.1 arylsulfatase -
  QIH96_RS26095 (QIH96_26090) - 5635450..5635692 (+) 243 WP_080669483.1 PilZ domain-containing protein -
  QIH96_RS26100 (QIH96_26095) - 5635875..5636066 (+) 192 WP_152621461.1 hypothetical protein -
  QIH96_RS26105 (QIH96_26100) amiE 5636169..5637221 (-) 1053 WP_304490024.1 ABC transporter ATP-binding protein Regulator
  QIH96_RS26110 (QIH96_26105) - 5637214..5638194 (-) 981 WP_248877926.1 ABC transporter ATP-binding protein -
  QIH96_RS26115 (QIH96_26110) - 5638191..5639012 (-) 822 WP_038936568.1 ABC transporter permease -
  QIH96_RS26120 (QIH96_26115) - 5639009..5639932 (-) 924 WP_304490025.1 ABC transporter permease -
  QIH96_RS26125 (QIH96_26120) - 5639993..5641579 (-) 1587 WP_304494212.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38561.00 Da        Isoelectric Point: 7.2809

>NTDB_id=766112 QIH96_RS26105 WP_304490024.1 5636169..5637221(-) (amiE) [Bradyrhizobium japonicum strain S04E-Bj]
MHEPQDRRGQARSDDDLILSIEDLAVHFPMGGGWLGRSRRVLRAVDGVDLSLRRGECLGLVGESGSGKSTVALSILGLLT
PTRGRIVLDGQVVTNRQSGDRKSLARSVQIVFQDPYASLNPRQTVRRTLEDPLRVHGVTAKSEIEDRVATMLRHVGLRPE
QADRYPHEFSGGQRQRIGIARALILNPRIVICDEPVSALDVSIRAQIINLLLELKDTLGLSYIMISHDLGVVEHMSDRVA
VMYLGRIVENGHWREIFERPAHPYTQALIAAIPDPLRHAPLATTGGDLPNPLNPPNGCAFSPRCRYAEAVCRHEPGPVLE
TRADGHEVRCWRADEIAGRTALASAEGENL

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=766112 QIH96_RS26105 WP_304490024.1 5636169..5637221(-) (amiE) [Bradyrhizobium japonicum strain S04E-Bj]
ATGCATGAGCCGCAAGACAGGCGGGGGCAGGCGAGGTCGGACGACGATCTCATTCTCAGCATCGAGGATCTCGCGGTTCA
TTTTCCGATGGGGGGCGGCTGGCTCGGCCGCAGCCGGCGGGTGCTCCGTGCCGTCGACGGTGTCGATCTCAGCCTGAGAC
GAGGTGAATGCCTCGGCCTCGTCGGCGAGTCCGGCTCGGGCAAGTCGACCGTCGCGTTGTCAATCCTGGGTCTGTTGACG
CCGACGCGCGGCCGCATCGTGCTGGACGGGCAGGTGGTGACGAACAGGCAATCCGGCGACCGAAAGTCGCTGGCCCGCAG
CGTGCAGATCGTCTTTCAGGATCCCTACGCCTCGCTCAACCCACGCCAGACCGTCCGCCGCACGCTGGAAGATCCCCTGC
GTGTGCACGGCGTGACCGCGAAAAGCGAGATCGAGGACCGTGTTGCAACGATGCTGCGGCATGTCGGCCTGCGGCCGGAA
CAGGCCGACCGCTATCCGCACGAATTCTCCGGCGGCCAGCGCCAGCGCATCGGGATTGCGCGCGCCCTGATCCTCAATCC
CAGGATCGTCATCTGCGACGAGCCGGTATCGGCGCTCGACGTCTCGATCCGCGCCCAGATCATCAATTTGCTGCTGGAAT
TGAAGGACACGCTCGGTCTCTCCTACATCATGATCAGCCACGACCTCGGGGTCGTCGAGCACATGAGCGACCGCGTCGCC
GTCATGTATCTCGGCCGCATCGTCGAGAACGGCCACTGGCGCGAGATTTTTGAGCGCCCGGCGCACCCCTATACGCAGGC
CCTGATCGCGGCCATCCCCGATCCGCTGCGTCATGCGCCGTTAGCGACGACAGGCGGCGACCTTCCCAACCCGCTCAATC
CGCCGAACGGATGCGCCTTCAGCCCGCGTTGCCGGTACGCGGAGGCCGTGTGTCGCCACGAGCCCGGTCCGGTGCTGGAA
ACGCGCGCCGATGGACATGAGGTGAGGTGCTGGCGGGCTGACGAGATTGCCGGTCGGACGGCGTTGGCGTCGGCGGAGGG
CGAAAATCTCTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(46-196)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(248-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.988

96

0.374
  amiE Streptococcus thermophilus LMD-9

38.988

96

0.374
  amiE Streptococcus salivarius strain HSISS4

37.91

95.714

0.363