Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O3T07_RS07580 Genome accession   NZ_CP114453
Coordinates   1610238..1611113 (-) Length   291 a.a.
NCBI ID   WP_060545819.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SE 4.7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1605238..1616113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3T07_RS07565 (O3T07_07575) xerC 1605543..1606433 (-) 891 WP_060545815.1 tyrosine recombinase XerC -
  O3T07_RS07570 (O3T07_07580) trmFO 1606657..1607964 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O3T07_RS07575 (O3T07_07585) topA 1607989..1610058 (-) 2070 WP_060545817.1 type I DNA topoisomerase -
  O3T07_RS07580 (O3T07_07590) dprA 1610238..1611113 (-) 876 WP_060545819.1 DNA-processing protein DprA Machinery gene
  O3T07_RS07585 (O3T07_07595) - 1611438..1611653 (-) 216 Protein_1458 transposase -
  O3T07_RS07590 (O3T07_07600) sucD 1611903..1612811 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  O3T07_RS07595 (O3T07_07605) sucC 1612833..1613999 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  O3T07_RS07600 (O3T07_07610) - 1614107..1614877 (-) 771 WP_060545821.1 ribonuclease HII -
  O3T07_RS07605 (O3T07_07615) ylqF 1614882..1615745 (-) 864 WP_060545823.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 34018.16 Da        Isoelectric Point: 9.7522

>NTDB_id=766031 O3T07_RS07580 WP_060545819.1 1610238..1611113(-) (dprA) [Staphylococcus epidermidis strain SE 4.7]
MIQHTMLKLYWANFTTAQLHHLTRKYPVFLSENEFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSLAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=766031 O3T07_RS07580 WP_060545819.1 1610238..1611113(-) (dprA) [Staphylococcus epidermidis strain SE 4.7]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGTCTTTCTATCAGAAAACGAATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTTTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

98.969

0.57
  dprA Staphylococcus aureus N315

57.639

98.969

0.57