Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QNK08_RS08430 Genome accession   NZ_CP125983
Coordinates   1592395..1592844 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ZKY04     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587395..1597844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK08_RS08390 (QNK08_08405) ctaE 1587412..1588035 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QNK08_RS08395 (QNK08_08410) ctaF 1588038..1588370 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QNK08_RS08400 (QNK08_08415) ctaG 1588398..1589291 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  QNK08_RS08405 (QNK08_08420) ylbA 1589323..1589685 (-) 363 WP_003232238.1 YugN family protein -
  QNK08_RS08410 (QNK08_08425) ylbB 1589825..1590271 (+) 447 WP_046160383.1 CBS domain-containing protein -
  QNK08_RS08415 (QNK08_08430) ylbC 1590355..1591395 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  QNK08_RS08420 (QNK08_08435) ylbD 1591626..1592024 (+) 399 WP_003232233.1 YlbD family protein -
  QNK08_RS08425 (QNK08_08440) ylbE 1592040..1592279 (+) 240 WP_003232231.1 YlbE-like family protein -
  QNK08_RS08430 (QNK08_08445) ylbF 1592395..1592844 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QNK08_RS08435 (QNK08_08450) ylbG 1592899..1593171 (+) 273 WP_069964462.1 YlbG family protein -
  QNK08_RS08440 (QNK08_08455) rsmD 1593494..1594048 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QNK08_RS08445 (QNK08_08460) coaD 1594053..1594538 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QNK08_RS08450 (QNK08_08465) spoVV 1594549..1595775 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QNK08_RS08455 (QNK08_08470) ylbK 1595956..1596738 (+) 783 WP_003232221.1 patatin family protein -
  QNK08_RS08460 (QNK08_08475) sepM 1596740..1597765 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=765979 QNK08_RS08430 WP_003221370.1 1592395..1592844(+) (ylbF) [Bacillus subtilis strain ZKY04]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=765979 QNK08_RS08430 WP_003221370.1 1592395..1592844(+) (ylbF) [Bacillus subtilis strain ZKY04]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCTACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1