Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   O3S71_RS06825 Genome accession   NZ_CP114406
Coordinates   1256631..1257410 (+) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis serovar tenebrionis strain NB-176     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251631..1262410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3S71_RS06805 trmFO 1252285..1253589 (+) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O3S71_RS06810 xerC 1253655..1254554 (+) 900 WP_001101244.1 tyrosine recombinase XerC -
  O3S71_RS06815 hslV 1254597..1255139 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  O3S71_RS06820 hslU 1255162..1256553 (+) 1392 WP_000550084.1 ATP-dependent protease ATPase subunit HslU -
  O3S71_RS06825 codY 1256631..1257410 (+) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  O3S71_RS06830 rpsB 1257759..1258460 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  O3S71_RS06835 tsf 1258564..1259451 (+) 888 WP_001018576.1 translation elongation factor Ts -
  O3S71_RS06840 pyrH 1259518..1260240 (+) 723 WP_000042669.1 UMP kinase -
  O3S71_RS06845 frr 1260243..1260800 (+) 558 WP_000531505.1 ribosome recycling factor -
  O3S71_RS06850 uppS 1260886..1261662 (+) 777 WP_000971296.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=765929 O3S71_RS06825 WP_000421290.1 1256631..1257410(+) (codY) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=765929 O3S71_RS06825 WP_000421290.1 1256631..1257410(+) (codY) [Bacillus thuringiensis serovar tenebrionis strain NB-176]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTGGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459