Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QM970_RS08445 Genome accession   NZ_CP125980
Coordinates   1592396..1592845 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain ZKY03     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587396..1597845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS08405 (QM970_08405) ctaE 1587413..1588036 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  QM970_RS08410 (QM970_08410) ctaF 1588039..1588371 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QM970_RS08415 (QM970_08415) ctaG 1588399..1589292 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  QM970_RS08420 (QM970_08420) ylbA 1589324..1589686 (-) 363 WP_003232238.1 YugN family protein -
  QM970_RS08425 (QM970_08425) ylbB 1589826..1590272 (+) 447 WP_046160383.1 CBS domain-containing protein -
  QM970_RS08430 (QM970_08430) ylbC 1590356..1591396 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  QM970_RS08435 (QM970_08435) ylbD 1591627..1592025 (+) 399 WP_003232233.1 YlbD family protein -
  QM970_RS08440 (QM970_08440) ylbE 1592041..1592280 (+) 240 WP_003232231.1 YlbE-like family protein -
  QM970_RS08445 (QM970_08445) ylbF 1592396..1592845 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QM970_RS08450 (QM970_08450) ylbG 1592900..1593172 (+) 273 WP_069964462.1 YlbG family protein -
  QM970_RS08455 (QM970_08455) rsmD 1593495..1594049 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QM970_RS08460 (QM970_08460) coaD 1594054..1594539 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QM970_RS08465 (QM970_08465) spoVV 1594550..1595776 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QM970_RS08470 (QM970_08470) ylbK 1595957..1596739 (+) 783 WP_003232221.1 patatin family protein -
  QM970_RS08475 (QM970_08475) sepM 1596741..1597766 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=765531 QM970_RS08445 WP_003221370.1 1592396..1592845(+) (ylbF) [Bacillus subtilis strain ZKY03]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=765531 QM970_RS08445 WP_003221370.1 1592396..1592845(+) (ylbF) [Bacillus subtilis strain ZKY03]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCTACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1