Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   O1449_RS14095 Genome accession   NZ_CP114264
Coordinates   2931915..2932355 (-) Length   146 a.a.
NCBI ID   WP_269229464.1    Uniprot ID   A0A9E9L409
Organism   Acinetobacter sp. TR3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926915..2937355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS14065 (O1449_14080) - 2927301..2928344 (+) 1044 WP_269238621.1 lipase secretion chaperone -
  O1449_RS14070 (O1449_14085) - 2928448..2929422 (+) 975 WP_269238622.1 triacylglycerol lipase -
  O1449_RS14075 (O1449_14090) rplS 2929481..2929852 (-) 372 WP_004660214.1 50S ribosomal protein L19 -
  O1449_RS14080 (O1449_14095) trmD 2930049..2930789 (-) 741 WP_269229465.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  O1449_RS14085 (O1449_14100) rimM 2930835..2931383 (-) 549 WP_005156501.1 ribosome maturation factor RimM -
  O1449_RS14090 (O1449_14105) rpsP 2931400..2931657 (-) 258 WP_004660208.1 30S ribosomal protein S16 -
  O1449_RS14095 (O1449_14110) pilE 2931915..2932355 (-) 441 WP_269229464.1 type IV pilin protein Machinery gene
  O1449_RS14100 (O1449_14115) comE 2932349..2932864 (-) 516 WP_269229463.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1449_RS14105 (O1449_14120) - 2932877..2936878 (-) 4002 WP_269238623.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15886.17 Da        Isoelectric Point: 8.9876

>NTDB_id=765309 O1449_RS14095 WP_269229464.1 2931915..2932355(-) (pilE) [Acinetobacter sp. TR3]
MVIEEKGFTLIELMIAVTIIGVLAAFAYPSYIQYKIRSQRVDAQSEMLFIAQRMQAYKATNGTFANATVNLLYGGTTTPK
QGGALYDLSFNPSPTLATSWVLVATPKSGTNQFGNGVLCLNDQGQRFWAKGASTCVLSQTSNWDGR

Nucleotide


Download         Length: 441 bp        

>NTDB_id=765309 O1449_RS14095 WP_269229464.1 2931915..2932355(-) (pilE) [Acinetobacter sp. TR3]
ATGGTAATTGAAGAGAAAGGTTTTACACTGATTGAATTGATGATTGCTGTCACAATTATAGGGGTTTTAGCTGCATTTGC
TTACCCTTCGTATATACAGTATAAGATTCGCAGTCAGCGTGTAGATGCTCAAAGTGAGATGCTATTTATTGCTCAACGTA
TGCAAGCATATAAAGCTACCAATGGAACATTTGCAAATGCAACAGTTAATTTGCTTTATGGTGGTACTACTACACCTAAA
CAAGGTGGTGCTTTATATGACCTGAGTTTCAACCCTTCACCAACTTTAGCGACATCTTGGGTATTAGTTGCAACACCTAA
AAGTGGGACAAATCAATTTGGTAATGGTGTCCTCTGTTTGAATGATCAAGGGCAGAGGTTTTGGGCCAAAGGGGCATCTA
CATGTGTCCTTTCCCAAACTTCAAACTGGGATGGACGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

52.482

96.575

0.507
  comF Acinetobacter baylyi ADP1

50.704

97.26

0.493