Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QMY08_RS13880 Genome accession   NZ_CP125889
Coordinates   2706161..2706925 (+) Length   254 a.a.
NCBI ID   WP_309598179.1    Uniprot ID   -
Organism   Escherichia coli strain EPSSH018     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2701161..2711925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY08_RS13860 (QMY08_13805) acpT 2702115..2702702 (+) 588 WP_000285771.1 4'-phosphopantetheinyl transferase AcpT -
  QMY08_RS13865 (QMY08_13810) nikA 2702813..2704387 (+) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  QMY08_RS13870 (QMY08_13815) nikB 2704387..2705331 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  QMY08_RS13875 (QMY08_13820) nikC 2705328..2706161 (+) 834 WP_001008968.1 nickel ABC transporter permease subunit NikC -
  QMY08_RS13880 (QMY08_13825) amiE 2706161..2706925 (+) 765 WP_309598179.1 nickel import ATP-binding protein NikD Regulator
  QMY08_RS13885 (QMY08_13830) nikE 2706922..2707728 (+) 807 WP_096939364.1 nickel import ATP-binding protein NikE -
  QMY08_RS13890 (QMY08_13835) nikR 2707734..2708135 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26804.33 Da        Isoelectric Point: 6.3761

>NTDB_id=764943 QMY08_RS13880 WP_309598179.1 2706161..2706925(+) (amiE) [Escherichia coli strain EPSSH018]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVPKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=764943 QMY08_RS13880 WP_309598179.1 2706161..2706925(+) (amiE) [Escherichia coli strain EPSSH018]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
CGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAGCCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398