Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O2T11_RS00685 Genome accession   NZ_CP114186
Coordinates   150183..150908 (-) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   A0A4Z6AQU4
Organism   Vibrio parahaemolyticus strain PH1273     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145183..155908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T11_RS00660 (O2T11_00660) - 146302..146793 (+) 492 WP_025505527.1 type II secretion system protein M -
  O2T11_RS00665 (O2T11_00665) - 146795..147556 (+) 762 WP_005496730.1 type II secretion system protein N -
  O2T11_RS00670 (O2T11_00670) cysQ 147842..148669 (-) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  O2T11_RS00675 (O2T11_00675) nudE 148711..149280 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  O2T11_RS00680 (O2T11_00680) nfuA 149501..150085 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  O2T11_RS00685 (O2T11_00685) comF 150183..150908 (-) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  O2T11_RS00690 (O2T11_00690) bioH 150993..151760 (+) 768 WP_029795160.1 pimeloyl-ACP methyl ester esterase BioH -
  O2T11_RS00695 (O2T11_00695) - 151884..152348 (+) 465 WP_005459035.1 hypothetical protein -
  O2T11_RS00700 (O2T11_00700) - 152482..154803 (-) 2322 WP_005487562.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=764904 O2T11_RS00685 WP_017449060.1 150183..150908(-) (comF) [Vibrio parahaemolyticus strain PH1273]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=764904 O2T11_RS00685 WP_017449060.1 150183..150908(-) (comF) [Vibrio parahaemolyticus strain PH1273]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z6AQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485