Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M1L51_RS08110 Genome accession   NZ_CP114180
Coordinates   1632531..1633310 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DMW1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1627531..1638310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L51_RS08090 trmFO 1628218..1629525 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M1L51_RS08095 xerC 1629595..1630512 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  M1L51_RS08100 hslV 1630528..1631073 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  M1L51_RS08105 hslU 1631090..1632493 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  M1L51_RS08110 codY 1632531..1633310 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M1L51_RS08115 flgB 1633664..1634053 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  M1L51_RS08120 flgC 1634053..1634505 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  M1L51_RS08125 fliE 1634516..1634836 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  M1L51_RS08130 fliF 1634879..1636489 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  M1L51_RS08135 fliG 1636502..1637518 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  M1L51_RS08140 fliH 1637511..1638266 (+) 756 WP_053573438.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=764780 M1L51_RS08110 WP_003154263.1 1632531..1633310(+) (codY) [Bacillus velezensis strain DMW1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=764780 M1L51_RS08110 WP_003154263.1 1632531..1633310(+) (codY) [Bacillus velezensis strain DMW1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471