Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M1L51_RS08080 Genome accession   NZ_CP114180
Coordinates   1624997..1625896 (+) Length   299 a.a.
NCBI ID   WP_053573437.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMW1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1619997..1630896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L51_RS08060 - 1620687..1622390 (+) 1704 WP_053573436.1 hypothetical protein -
  M1L51_RS08065 - 1622387..1622668 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  M1L51_RS08070 sucC 1622843..1624000 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  M1L51_RS08075 sucD 1624029..1624931 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  M1L51_RS08080 dprA 1624997..1625896 (+) 900 WP_053573437.1 DNA-processing protein DprA Machinery gene
  M1L51_RS08085 topA 1626078..1628153 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  M1L51_RS08090 trmFO 1628218..1629525 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M1L51_RS08095 xerC 1629595..1630512 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32923.14 Da        Isoelectric Point: 8.7412

>NTDB_id=764779 M1L51_RS08080 WP_053573437.1 1624997..1625896(+) (dprA) [Bacillus velezensis strain DMW1]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAREAIFREIERKDPKLDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=764779 M1L51_RS08080 WP_053573437.1 1624997..1625896(+) (dprA) [Bacillus velezensis strain DMW1]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCGGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGAAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

71.237

100

0.712