Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QMY05_RS10155 Genome accession   NZ_CP125885
Coordinates   2102907..2103563 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain AHS8C65RI     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2097907..2108563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY05_RS10120 (QMY05_10110) dcyD 2098787..2099773 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  QMY05_RS10125 (QMY05_10115) tcyL 2099788..2100456 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QMY05_RS10130 (QMY05_10120) tcyN 2100453..2101205 (+) 753 WP_001272987.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QMY05_RS10135 (QMY05_10125) sdiA 2101435..2102157 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  QMY05_RS10140 (QMY05_10130) yecF 2102224..2102448 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QMY05_RS10145 (QMY05_10135) yecU 2102435..2102611 (-) 177 WP_000590347.1 protein YecU -
  QMY05_RS10150 - 2102694..2102765 (-) 72 Protein_1984 transcriptional regulator -
  QMY05_RS10155 (QMY05_10140) letA 2102907..2103563 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QMY05_RS10160 (QMY05_10145) uvrC 2103560..2105392 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QMY05_RS10165 (QMY05_10150) pgsA 2105449..2105997 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMY05_RS10185 (QMY05_10170) yecA 2106646..2107311 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=764779 QMY05_RS10155 WP_000611335.1 2102907..2103563(+) (letA) [Escherichia coli strain AHS8C65RI]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=764779 QMY05_RS10155 WP_000611335.1 2102907..2103563(+) (letA) [Escherichia coli strain AHS8C65RI]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486