Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   O0R49_RS08225 Genome accession   NZ_CP114177
Coordinates   1589502..1590281 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain PLA 1006     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1584502..1595281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS08205 (O0R49_08205) trmFO 1585206..1586510 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O0R49_RS08210 (O0R49_08210) xerC 1586573..1587490 (+) 918 WP_269196330.1 tyrosine recombinase XerC -
  O0R49_RS08215 (O0R49_08215) hslV 1587505..1588050 (+) 546 WP_095408474.1 ATP-dependent protease subunit HslV -
  O0R49_RS08220 (O0R49_08220) hslU 1588067..1589467 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  O0R49_RS08225 (O0R49_08225) codY 1589502..1590281 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  O0R49_RS08230 (O0R49_08230) flgB 1590570..1590959 (+) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  O0R49_RS08235 (O0R49_08235) flgC 1590959..1591411 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  O0R49_RS08240 (O0R49_08240) fliE 1591423..1591740 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  O0R49_RS08245 (O0R49_08245) fliF 1591790..1593382 (+) 1593 WP_095408476.1 flagellar basal-body MS-ring/collar protein FliF -
  O0R49_RS08250 (O0R49_08250) fliG 1593394..1594410 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  O0R49_RS08255 (O0R49_08255) fliH 1594403..1595167 (+) 765 WP_269196331.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=764708 O0R49_RS08225 WP_007499612.1 1589502..1590281(+) (codY) [Bacillus safensis strain PLA 1006]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=764708 O0R49_RS08225 WP_007499612.1 1589502..1590281(+) (codY) [Bacillus safensis strain PLA 1006]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471