Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   O0R52_RS08610 Genome accession   NZ_CP114066
Coordinates   1706485..1707384 (+) Length   299 a.a.
NCBI ID   WP_059335799.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1701485..1712384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS08590 (O0R52_08590) - 1702154..1703884 (+) 1731 WP_256766973.1 hypothetical protein -
  O0R52_RS08595 (O0R52_08595) - 1703881..1704162 (+) 282 WP_059292791.1 FlhB-like flagellar biosynthesis protein -
  O0R52_RS08600 (O0R52_08600) sucC 1704336..1705493 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  O0R52_RS08605 (O0R52_08605) sucD 1705522..1706424 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  O0R52_RS08610 (O0R52_08610) dprA 1706485..1707384 (+) 900 WP_059335799.1 DNA-processing protein DprA Machinery gene
  O0R52_RS08615 (O0R52_08615) topA 1707573..1709648 (+) 2076 WP_044155905.1 type I DNA topoisomerase -
  O0R52_RS08620 (O0R52_08620) trmFO 1709724..1711031 (+) 1308 WP_106294747.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  O0R52_RS08625 (O0R52_08625) xerC 1711099..1712004 (+) 906 WP_256766906.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33022.28 Da        Isoelectric Point: 9.3995

>NTDB_id=764380 O0R52_RS08610 WP_059335799.1 1706485..1707384(+) (dprA) [Bacillus halotolerans strain B13]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=764380 O0R52_RS08610 WP_059335799.1 1706485..1707384(+) (dprA) [Bacillus halotolerans strain B13]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.612

100

0.836