Detailed information NTG0764264

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: QMY43_RS07380
• Genome accession: NZ_CP125856
• Coordinates: 1547168..1548148 (+)
• Length: 326 a.a.
• NCBI ID: WP_005454798.1
• Uniprot ID: Q87Q07
• Organism: Vibrio parahaemolyticus strain G855
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1542168..1553148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY43_RS07360 (QMY43_07360)	-	1542525..1544135 (+)	1611	WP_159404132.1	peptide ABC transporter substrate-binding protein	-
QMY43_RS07365 (QMY43_07365)	oppB	1544302..1545222 (+)	921	WP_025505301.1	oligopeptide ABC transporter permease OppB	-
QMY43_RS07370 (QMY43_07370)	-	1545232..1546164 (+)	933	WP_140389060.1	ABC transporter permease subunit	-
QMY43_RS07375 (QMY43_07375)	-	1546175..1547158 (+)	984	WP_193237430.1	oligopeptide/dipeptide ABC transporter ATP-binding protein	-
QMY43_RS07380 (QMY43_07380)	amiE	1547168..1548148 (+)	981	WP_005454798.1	oligopeptide/dipeptide ABC transporter ATP-binding protein	Regulator
QMY43_RS07385 (QMY43_07385)	-	1548158..1549954 (+)	1797	WP_159404133.1	aminopeptidase P family protein	-
QMY43_RS07390 (QMY43_07390)	-	1550207..1552651 (-)	2445	WP_159404134.1	collagenase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36406.21 Da
• Isoelectric Point: 8.3113

>NTDB_id=764264 QMY43_RS07380 WP_005454798.1 1547168..1548148(+) (amiE) [Vibrio parahaemolyticus strain G855]
MNQKEVLLSARDLQVHFPVSRHLIPSRRKIVQAVNGIDLDVYRGETLGIVGESGCGKSTLARALLRLVEPTHGKLTWKGE
DMRGFSKNKLARRRQEFQMIFQDPSASLNPRLTISECIAEPLLTHQPQLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGKPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNRDIQLLPGDLPSPLNPPSGCVFRTRCPEATELCGQQSPVKTGTEQHHI
YCSNMI

Nucleotide

• Length: 981 bp

>NTDB_id=764264 QMY43_RS07380 WP_005454798.1 1547168..1548148(+) (amiE) [Vibrio parahaemolyticus strain G855]
ATGAATCAGAAAGAAGTGTTATTGTCCGCTCGCGACTTGCAAGTGCATTTTCCTGTTTCGCGACACCTCATTCCGAGCCG
AAGAAAGATCGTACAAGCCGTCAACGGCATCGATTTGGATGTTTATCGAGGCGAAACGCTCGGCATTGTGGGCGAATCAG
GCTGCGGAAAATCCACCTTAGCGCGTGCTCTGCTGCGCTTAGTTGAACCCACGCACGGTAAGCTCACTTGGAAAGGTGAA
GACATGCGTGGCTTCAGCAAAAACAAGTTAGCGCGTCGTCGCCAAGAATTTCAGATGATATTCCAAGACCCATCGGCGAG
CCTCAATCCGAGATTGACGATTTCAGAATGTATCGCAGAGCCGTTACTCACACACCAGCCTCAACTCAAACGCGCCGAAG
TCGAAAAACGCGTCATTGCGATGATGGACAAAGTGGGTCTGTTGGCAAGCCAACGTAACCGATATCCGCATGAGTTTTCT
GGCGGTCAGTGCCAACGTGTTGGCATCGCGCGAGCCTTAATCCTCAATCCGGACTTGGTGGTGTGTGATGAACCCGTCAG
CGCATTGGATGTCTCGATTCAAGCGCAGGTCATTAATTTGCTCGACGACCTTAAACAAGAAATGGGACTGACACTGGTGA
TGATCGCTCATGACCTAAGCGTTGTGCGCCATATCAGCGACCGAGTGATGGTGATGTACCTTGGCAAACCAATGGAAGTG
GGACGCTACGACCAAGTGTTCGACGATGCGCAGCATCCCTACACAAAAGCATTGCTTTCTGCGGTACCGATTGCCAATCC
GCAACTTGCACGCAACCGCGACATCCAATTGTTGCCCGGAGACCTCCCCTCTCCGCTCAACCCACCAAGCGGTTGTGTTT
TTAGAACCCGATGCCCAGAAGCTACGGAACTATGTGGGCAGCAAAGCCCAGTCAAAACAGGCACTGAGCAACATCATATT
TACTGTTCAAACATGATTTAG

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (238-305)

• ABC transporter (ABC_tran) (35-186)

3D structure

• AlphaFold DB: Q87Q07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus thermophilus LMG 18311	40.514	95.399	0.386
amiE	Streptococcus thermophilus LMD-9	40.514	95.399	0.386
amiF	Streptococcus salivarius strain HSISS4	45.455	84.356	0.383
amiE	Streptococcus salivarius strain HSISS4	39.744	95.706	0.38
amiF	Streptococcus thermophilus LMG 18311	45.421	83.742	0.38
amiF	Streptococcus thermophilus LMD-9	45.055	83.742	0.377
oppD	Streptococcus mutans UA159	38.339	96.012	0.368