Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   O0R51_RS02755 Genome accession   NZ_CP114055
Coordinates   595929..596534 (+) Length   201 a.a.
NCBI ID   WP_374210824.1    Uniprot ID   -
Organism   Bergeyella cardium strain BCV     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590929..601534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R51_RS02740 (O0R51_02735) - 591627..592070 (-) 444 WP_120488500.1 6-carboxytetrahydropterin synthase -
  O0R51_RS02745 (O0R51_02740) - 592525..593241 (-) 717 WP_160223912.1 DNA-binding domain-containing protein -
  O0R51_RS02750 (O0R51_02745) - 593325..595361 (-) 2037 WP_160223913.1 FISUMP domain-containing protein -
  O0R51_RS02755 (O0R51_02750) comF 595929..596534 (+) 606 WP_374210824.1 ComF family protein Machinery gene
  O0R51_RS02760 (O0R51_02755) infB 596585..599368 (-) 2784 WP_160223914.1 translation initiation factor IF-2 -
  O0R51_RS02765 (O0R51_02760) nusA 599457..600692 (-) 1236 WP_120488495.1 transcription termination factor NusA -
  O0R51_RS02770 (O0R51_02765) rimP 600704..601171 (-) 468 WP_160223915.1 ribosome assembly cofactor RimP -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23115.82 Da        Isoelectric Point: 7.8161

>NTDB_id=764264 O0R51_RS02755 WP_374210824.1 595929..596534(+) (comF) [Bergeyella cardium strain BCV]
MIESDKAVCDACLMNIRFSYDDFGTKSELWAKCNLLFPLENAFALMIFDEVGLGRELIHQLKYDGIESIGKIFADWTAQR
LNFGEDKPDLLVTIPLHPKKQRIRGYNQLHLYAEELSKFYDIPFDHQALKRVKFQRKAQAKRNAEERKIKGQAFALNKDI
RGKHILLIDDVITTGNTMSAAAWELLKNENKLSILVMAVDL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=764264 O0R51_RS02755 WP_374210824.1 595929..596534(+) (comF) [Bergeyella cardium strain BCV]
ATGATTGAAAGCGATAAAGCGGTGTGCGATGCCTGCTTAATGAATATTAGATTCTCTTATGATGATTTTGGAACAAAGAG
CGAACTCTGGGCAAAGTGTAACCTGCTTTTCCCTTTGGAAAATGCTTTTGCACTGATGATTTTTGATGAGGTAGGATTAG
GCAGGGAACTTATTCATCAGCTAAAATATGACGGCATAGAAAGCATTGGAAAAATCTTTGCAGACTGGACGGCTCAGAGG
CTCAATTTCGGAGAAGACAAACCCGACTTGCTTGTAACCATCCCCCTACATCCAAAGAAACAAAGGATAAGAGGCTATAA
TCAGCTACATCTCTATGCGGAGGAGCTATCAAAGTTCTATGATATTCCGTTTGACCACCAAGCACTGAAGAGAGTTAAGT
TTCAGAGAAAGGCGCAGGCAAAAAGAAATGCAGAAGAGCGGAAGATAAAAGGGCAAGCCTTCGCTTTGAATAAAGATATA
CGCGGGAAACATATCCTGCTGATAGATGATGTGATTACTACAGGAAATACAATGTCTGCCGCAGCGTGGGAGCTTCTGAA
AAATGAGAACAAGCTGAGCATTCTGGTAATGGCAGTAGATTTATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

48.259

100

0.483
  comF Porphyromonas gingivalis W83

36.453

100

0.368