Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   O0R44_RS11020 Genome accession   NZ_CP114053
Coordinates   2453859..2455730 (-) Length   623 a.a.
NCBI ID   WP_269136720.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain Y46     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2456639..2467161 2453859..2455730 flank 909


Gene organization within MGE regions


Location: 2453859..2467161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R44_RS11020 (O0R44_11020) rcrP 2453859..2455730 (-) 1872 WP_269136720.1 ABC transporter ATP-binding protein Regulator
  O0R44_RS11025 (O0R44_11025) - 2455965..2456495 (-) 531 WP_032743820.1 MarR family winged helix-turn-helix transcriptional regulator -
  O0R44_RS11030 (O0R44_11030) - 2456639..2458162 (-) 1524 WP_032743819.1 amino acid permease -
  O0R44_RS11035 (O0R44_11035) - 2458350..2461970 (-) 3621 WP_032743818.1 FtsX-like permease family protein -
  O0R44_RS11040 (O0R44_11040) - 2462059..2462760 (-) 702 WP_032743817.1 ABC transporter ATP-binding protein -
  O0R44_RS11045 (O0R44_11045) - 2463007..2464488 (+) 1482 WP_032743853.1 amino acid permease -
  O0R44_RS11050 (O0R44_11050) - 2464636..2465271 (-) 636 WP_032743816.1 YesL family protein -
  O0R44_RS11055 (O0R44_11055) - 2465465..2466307 (-) 843 WP_012578661.1 carbohydrate ABC transporter permease -
  O0R44_RS11060 (O0R44_11060) - 2466307..2467161 (-) 855 WP_032743815.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68011.50 Da        Isoelectric Point: 5.4498

>NTDB_id=764253 O0R44_RS11020 WP_269136720.1 2453859..2455730(-) (rcrP) [Bifidobacterium longum subsp. infantis strain Y46]
MFRIMKYLSKAEIGQMLVALLTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAVVTGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVGNGTKTAADVAKTGQRGTVEFRNVGFTYPDSREAMLEGISFTATQGQTVAFIGSTGSGKSSLINLVPRFYDVSEGQV
LVDGVDVRDYDLKTLRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMTDSSTASGRKHETALLSADKAAQDAGLPA
ERMERVKAAADVAQASEFVARLDGGYAAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHRELLEHCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=764253 O0R44_RS11020 WP_269136720.1 2453859..2455730(-) (rcrP) [Bifidobacterium longum subsp. infantis strain Y46]
ATGTTCCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTTGTCGCCCTGCTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTACATGTCAGACATCACCACCTTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCGTGGCGTGCGCCGTCGTCACCGGCTACATAGCCGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTTCGGACCGGCCGAGATGAG
CAAGTTCTCCACGGCCAGCCTCATCACCCGCTCCACCAACGACATCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTATGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCATCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAGTCCAAGTTCACCAAGGCCAACAAGGACCTCACCGAAACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAATGGTCTGATGCTCGCCGTCTACTGGATCGGCGCCTACCTGATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTTTCGGCGCAGCGCATCATGGAAGTGCTCGACACCGAG
CCGATCGTCGGCAACGGCACCAAGACCGCCGCCGACGTGGCCAAGACCGGCCAGCGCGGCACCGTGGAATTCCGCAACGT
CGGCTTCACCTACCCGGACTCGCGCGAAGCGATGCTCGAAGGCATCAGCTTCACCGCCACGCAAGGCCAGACCGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAATCGTCGCTGATCAACCTCGTGCCGCGCTTCTATGACGTCAGCGAAGGCCAGGTG
CTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGACCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGACGGACA
GCTCCACCGCCTCCGGCCGCAAGCACGAGACCGCACTGCTCTCCGCGGACAAGGCCGCGCAGGACGCCGGCCTGCCGGCC
GAGCGGATGGAGCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAATTCGTGGCGCGCCTGGACGGCGGATACGC
CGCCGCGATCGCACAGGGCGGCTCGAACGTGTCCGGCGGCCAGAAGCAGCGACTGTCCATCGCACGCGCGGTGTACCGGC
ATCCGGAGATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACTGACCGCGAGGTGCGCGACGCGCTCGCC
CGCGAAGCCAAGGACTCCACCAAACTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGCCAGGGCACGCACCGGGAACTGCTCGAACACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(54-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.499

100

0.493