Detailed information NTG0076422

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TthTMY_RS00735
• Genome accession: NZ_AP025158
• Coordinates: 117859..118923 (-)
• Length: 354 a.a.
• NCBI ID: WP_223903317.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain TMY
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 112859..123923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TthTMY_RS00705 (TthTMY_01330)	recF	113681..114712 (+)	1032	WP_096411511.1	DNA replication/repair protein RecF	Machinery gene
TthTMY_RS00710 (TthTMY_01340)	-	114697..115455 (+)	759	WP_223903315.1	DUF721 domain-containing protein	-
TthTMY_RS00715 (TthTMY_01350)	-	115456..116244 (+)	789	WP_223903316.1	C40 family peptidase	-
TthTMY_RS00720 (TthTMY_01360)	-	116198..117118 (-)	921	WP_096411515.1	nitroreductase family protein	-
TthTMY_RS00725 (TthTMY_01370)	-	117152..117481 (-)	330	WP_096411517.1	nucleotidyltransferase domain-containing protein	-
TthTMY_RS00730 (TthTMY_01380)	-	117451..117834 (-)	384	WP_096411519.1	HEPN domain-containing protein	-
TthTMY_RS00735 (TthTMY_01390)	pilD	117859..118923 (-)	1065	WP_223903317.1	prepilin peptidase	Machinery gene
TthTMY_RS00740 (TthTMY_01400)	-	118990..120522 (+)	1533	WP_223903318.1	thermostable carboxypeptidase 1	-
TthTMY_RS00745 (TthTMY_01410)	groL	120587..122218 (-)	1632	WP_096411521.1	chaperonin GroEL	-
TthTMY_RS00750 (TthTMY_01420)	groES	122231..122536 (-)	306	WP_011174076.1	co-chaperone GroES	-
TthTMY_RS00755 (TthTMY_01430)	-	122634..123416 (-)	783	WP_096411522.1	TrmH family RNA methyltransferase	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37759.20 Da
• Isoelectric Point: 8.1207

>NTDB_id=76422 TthTMY_RS00735 WP_223903317.1 117859..118923(-) (pilD) [Thermus thermophilus strain TMY]
MWPLLALVLGLVVGSFLNVVLHRLPRGESMVYPPSRCPHCGHRLGPSDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGIFLLASLFYPPGVEALLVFLFLALLVALAFIDLDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLG
LVAGYGNLFLRRFREGRPEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRPVVLPDRLTLPLLPLALLLAPA
LGLDLLESLKGSLLAAGGLALAGGLYWAFRPLPEEDEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLR
QRKLPFGPYLALGGVVAFFFGEAIWGAYLRLLGL

Nucleotide

• Length: 1065 bp

>NTDB_id=76422 TthTMY_RS00735 WP_223903317.1 117859..118923(-) (pilD) [Thermus thermophilus strain TMY]
ATGTGGCCCCTTCTCGCCCTGGTCCTCGGCCTTGTGGTGGGCTCCTTTCTGAACGTGGTCCTCCACCGCCTGCCCCGGGG
GGAGTCCATGGTCTACCCCCCTTCCCGCTGCCCCCACTGCGGCCACCGCCTGGGGCCTTCCGACCTGGTGCCCGTCCTCT
CCTACCTCGCCTTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGATCTTCCTCCTGGCAAGCCTCTTCTACCCCCCCGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCCTCCT
CGTGGCCCTCGCCTTCATTGACCTGGACACCTTTGAGCTTCCCGACCCCCTCACCTACGGCCTCCTCTTCCTGGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTTGGC
CTGGTGGCGGGGTACGGGAACCTCTTCCTGAGGCGCTTTAGGGAGGGCAGGCCCGAGGTCCCCGTGGGCCCCCACCAGGT
CCACATGGCGGCCCTCTTCGGGGCGCTTTTGGGTCCGGGGGTGGGCATGGCCCTGGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGCCGCCCCGTGGTCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTTGCCCTCCTCCTCGCCCCCGCC
CTGGGCCTGGACCTCCTGGAAAGCCTAAAGGGAAGCCTCCTCGCCGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAAGACGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTTTAGGGGCCCTTG
GCGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCCCTCCTCGGCCTTCTCCTCCGC
CAAAGAAAGCTTCCCTTTGGGCCTTACCTGGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCATTTGGGGGGC
GTACCTGCGCCTCCTCGGTCTCTAG

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (219-317)

• Type IV leader peptidase family (Peptidase_A24) (102-209)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	45.431	100	0.492