Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   LDO79_RS09590 Genome accession   NZ_AP024984
Coordinates   1769504..1770769 (+) Length   421 a.a.
NCBI ID   WP_011228985.1    Uniprot ID   Q5SH46
Organism   Thermus thermophilus strain JCM10941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764504..1775769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS09555 (JCM10941_18580) - 1764553..1765737 (+) 1185 WP_011228979.1 ABC transporter substrate-binding protein -
  LDO79_RS09560 (JCM10941_18590) folE 1765750..1766370 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  LDO79_RS09565 (JCM10941_18600) - 1766409..1767101 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  LDO79_RS09570 (JCM10941_18610) - 1767082..1767462 (-) 381 WP_011228981.1 NUDIX hydrolase -
  LDO79_RS09575 (JCM10941_18620) - 1767453..1768316 (-) 864 WP_011228982.1 DUF1028 domain-containing protein -
  LDO79_RS09580 - 1768418..1768534 (+) 117 Protein_1864 GTP-binding protein -
  LDO79_RS09585 (JCM10941_18640) - 1768796..1769473 (-) 678 WP_164926081.1 hypothetical protein -
  LDO79_RS09590 (JCM10941_18650) rarA 1769504..1770769 (+) 1266 WP_011228985.1 replication-associated recombination protein A Machinery gene
  LDO79_RS09595 (JCM10941_18660) - 1770720..1771289 (-) 570 WP_011228986.1 hypothetical protein -
  LDO79_RS09600 (JCM10941_18670) - 1771316..1772101 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  LDO79_RS09605 (JCM10941_18680) - 1772131..1773309 (+) 1179 Protein_1869 CaiB/BaiF CoA transferase family protein -
  LDO79_RS09615 (JCM10941_18690) - 1773433..1774311 (+) 879 WP_011228987.1 ABC transporter ATP-binding protein -
  LDO79_RS09620 (JCM10941_18700) - 1774304..1775074 (+) 771 WP_011228988.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46178.94 Da        Isoelectric Point: 8.3310

>NTDB_id=76413 LDO79_RS09590 WP_011228985.1 1769504..1770769(+) (rarA) [Thermus thermophilus strain JCM10941]
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=76413 LDO79_RS09590 WP_011228985.1 1769504..1770769(+) (rarA) [Thermus thermophilus strain JCM10941]
ATGAGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCCAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCAGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCGGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTTAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5SH46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment