Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OTR81_RS15400 Genome accession   NZ_CP113980
Coordinates   3211789..3214182 (-) Length   797 a.a.
NCBI ID   WP_036092461.1    Uniprot ID   A0A3N9TV62
Organism   Listeria newyorkensis strain CMB191063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3206789..3219182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTR81_RS15375 (OTR81_12195) - 3206881..3207567 (-) 687 WP_036092471.1 ABC transporter ATP-binding protein -
  OTR81_RS15380 (OTR81_12190) - 3207581..3209059 (-) 1479 WP_036092468.1 ABC transporter permease -
  OTR81_RS15385 (OTR81_12185) pieR 3209236..3209931 (+) 696 WP_036092466.1 two component system response regulator PieR -
  OTR81_RS15390 (OTR81_12180) pieS 3209928..3211364 (+) 1437 WP_052164867.1 two component system sensor histidine kinase PieS -
  OTR81_RS15395 (OTR81_12175) - 3211424..3211774 (-) 351 WP_036092463.1 DUF4180 domain-containing protein -
  OTR81_RS15400 (OTR81_12170) recD2 3211789..3214182 (-) 2394 WP_036092461.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OTR81_RS15405 (OTR81_12165) - 3214216..3214884 (-) 669 WP_036092551.1 tetratricopeptide repeat protein -
  OTR81_RS15410 (OTR81_12160) - 3214900..3215625 (-) 726 WP_036092459.1 alpha/beta hydrolase -
  OTR81_RS15415 (OTR81_12155) mnmA 3215700..3216809 (-) 1110 WP_036092456.1 tRNA 2-thiouridine(34) synthase MnmA -
  OTR81_RS15420 (OTR81_12150) - 3216828..3217973 (-) 1146 WP_036092451.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90749.00 Da        Isoelectric Point: 4.8332

>NTDB_id=764005 OTR81_RS15400 WP_036092461.1 3211789..3214182(-) (recD2) [Listeria newyorkensis strain CMB191063]
MDTQETLGLLGENEELYMKGLVMSTIFHNSDNLFSVVRIQVQDTNTTWDEKDIVVTGFFPALHEQEAYIFHGKLMDHAKF
GQQFKADRFKKEMPQTKQGLVQYLSGELFKGIGKKTAERVVETLGEDAISRILSDPSLLQEVPRLPLATAESLLESLREN
QGLEHIMVSLNEYGFGPQLSMKIFQAYKQDTLNVLENNPYKLIEDVKGIGFNRADELGRKLGLGGNHYSRLQAAILYMLE
QESLQQGNVFMEREVLLETVTQLLENSEPIRIEQEQLTKQLLALEEDQKVMTENTRVYVPSLYFAEAGFAAHVKRMMRQK
EYEELFPKSEFYIALGELEDRIGVSYGETQKVALEQALMSPMLILTGGPGTGKTTVIKGIVELYAELNGVNLDPMSYKDG
QKLPILLAAPTGRAAKRMTESTGLPAMTIHRLLGMNGQEQLDDDNERSIEGKLLIIDEMSMVDIWLANQLFRALPAHMQV
ILVGDQDQLPSVGPGQVLKDMLRSNEIPTVELTDIYRQEDGSSIIELAHDIRQGFLPATFTKNSTDRSFFHCTVNQIAEV
VEKVVENAKKKGFRAKDIQVLAPMYRGPAGIDILNRKMQEIFNANPDGKRKEVKFGDIVFRIGDRVLQLVNQPEKNVFNG
DFGEIVSIIYAKENTEKQDMVVVQFDQTEVEYFRQEFGQLTHAYCCSIHKAQGSEFPIVIMPVVRSYYRMLRRDILYTAV
TRSKQFLIICGEEDAFRMGVERIDEEKRNTTLYERLLSEEDMLATVSNRKLLTEENWMHINPMIGMDDITPYQFMRA

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=764005 OTR81_RS15400 WP_036092461.1 3211789..3214182(-) (recD2) [Listeria newyorkensis strain CMB191063]
ATGGACACGCAAGAAACGTTGGGATTGCTCGGTGAGAACGAGGAACTGTATATGAAAGGACTCGTGATGTCGACGATTTT
TCATAATAGTGATAACTTATTTTCTGTGGTGCGGATTCAGGTGCAGGATACGAATACGACGTGGGACGAGAAGGATATCG
TTGTGACGGGCTTTTTTCCTGCCCTTCATGAGCAAGAGGCGTACATATTTCATGGTAAATTAATGGATCATGCCAAATTT
GGTCAGCAGTTTAAAGCGGATCGGTTCAAAAAAGAGATGCCGCAGACGAAGCAGGGTTTGGTGCAGTATTTATCTGGGGA
ACTTTTTAAAGGCATTGGGAAAAAGACGGCGGAACGTGTGGTGGAGACGCTTGGCGAGGATGCGATTAGTCGGATTTTGT
CTGATCCATCGCTGCTTCAAGAGGTGCCTCGTTTGCCACTTGCGACGGCGGAAAGTTTGCTGGAATCGCTGCGCGAGAAT
CAAGGTTTGGAACATATTATGGTGAGCTTGAATGAGTACGGTTTTGGGCCGCAGCTCTCGATGAAAATTTTTCAGGCGTA
TAAGCAGGATACGTTGAATGTGCTGGAAAATAATCCTTATAAGCTGATTGAAGATGTGAAGGGGATTGGGTTTAATCGTG
CGGATGAGCTGGGGCGCAAGCTTGGTCTTGGTGGGAATCATTATTCGCGGTTGCAGGCGGCGATTCTGTACATGTTGGAG
CAGGAGTCGTTGCAACAGGGAAATGTATTTATGGAGCGGGAAGTGTTGTTGGAGACGGTGACACAGCTGCTTGAGAATAG
TGAGCCGATTCGGATTGAGCAGGAGCAGTTGACGAAGCAGTTATTGGCGCTTGAGGAAGATCAGAAGGTGATGACGGAGA
ACACGCGGGTGTACGTGCCATCGCTTTATTTTGCGGAGGCTGGATTTGCGGCGCACGTGAAACGGATGATGCGACAAAAG
GAGTACGAGGAACTTTTTCCAAAATCGGAGTTTTATATCGCGCTTGGTGAACTGGAGGATCGGATCGGGGTTTCTTACGG
GGAAACGCAGAAGGTGGCGCTTGAGCAGGCGTTAATGTCGCCGATGCTGATTTTGACTGGTGGACCGGGTACGGGGAAAA
CGACCGTTATTAAGGGAATCGTGGAGCTTTACGCGGAATTGAATGGTGTGAATTTGGACCCGATGTCGTATAAAGATGGA
CAGAAATTGCCGATTTTGTTGGCGGCTCCGACGGGACGTGCGGCGAAACGGATGACAGAATCGACAGGATTGCCTGCGAT
GACGATTCACCGATTGCTGGGAATGAACGGGCAGGAGCAGTTGGACGATGATAATGAGCGTTCAATTGAAGGGAAACTGT
TGATTATTGATGAGATGTCGATGGTCGATATTTGGCTTGCGAACCAGCTTTTTCGGGCTTTGCCAGCACACATGCAAGTG
ATTTTAGTGGGAGACCAGGATCAGTTGCCATCAGTTGGACCGGGCCAAGTTTTGAAGGACATGTTGCGGTCGAACGAGAT
TCCGACGGTGGAGTTGACGGATATTTATCGGCAGGAAGACGGTTCCTCGATTATTGAGCTGGCGCATGATATTCGGCAAG
GATTTTTACCAGCGACCTTCACGAAAAATAGCACGGATCGGTCGTTTTTCCATTGTACGGTGAACCAAATTGCGGAAGTC
GTGGAGAAAGTCGTGGAAAATGCTAAGAAAAAAGGGTTTCGTGCGAAGGATATCCAAGTTTTGGCACCGATGTATCGCGG
ACCTGCGGGAATCGATATTTTAAATCGCAAAATGCAGGAAATTTTTAATGCGAATCCGGATGGAAAGCGTAAAGAAGTGA
AGTTTGGCGATATCGTTTTTCGGATTGGGGATCGGGTGTTGCAACTTGTGAATCAGCCGGAGAAGAACGTTTTTAATGGC
GATTTTGGCGAGATTGTCTCAATTATTTATGCGAAGGAAAACACGGAGAAGCAGGATATGGTTGTGGTGCAGTTTGACCA
GACGGAGGTCGAGTATTTCAGGCAGGAGTTTGGTCAGTTAACGCACGCGTATTGTTGTTCGATTCATAAGGCGCAGGGCA
GCGAGTTTCCGATTGTGATTATGCCGGTGGTGCGGAGTTATTACCGGATGTTGCGACGCGATATTTTGTATACGGCGGTG
ACTCGGAGCAAGCAGTTTCTGATTATTTGTGGGGAAGAGGACGCGTTTCGGATGGGCGTCGAGCGGATTGATGAGGAGAA
GCGGAATACGACGCTATATGAGCGGTTGCTGAGTGAGGAAGATATGCTGGCGACAGTGAGTAATCGGAAGTTGTTGACGG
AGGAAAATTGGATGCATATTAATCCGATGATTGGGATGGATGATATTACTCCCTACCAGTTTATGCGCGCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N9TV62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.888

98.62

0.571