Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   OIY87_RS04260 Genome accession   NZ_CP113954
Coordinates   817444..818310 (+) Length   288 a.a.
NCBI ID   WP_269725201.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 812444..823310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS04230 (OIY87_05545) - 812720..813598 (+) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -
  OIY87_RS04235 (OIY87_05550) atpD 813665..815071 (+) 1407 WP_009853908.1 F0F1 ATP synthase subunit beta -
  OIY87_RS04240 (OIY87_05555) - 815084..815500 (+) 417 WP_009853909.1 F0F1 ATP synthase subunit epsilon -
  OIY87_RS04245 (OIY87_05560) - 815565..815801 (+) 237 WP_012961763.1 DUF1146 family protein -
  OIY87_RS04250 (OIY87_05565) murA 815864..817138 (+) 1275 WP_337251544.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OIY87_RS04255 (OIY87_05570) - 817141..817329 (+) 189 WP_009853912.1 DNA-directed RNA polymerase subunit beta -
  OIY87_RS04260 (OIY87_05575) endA 817444..818310 (+) 867 WP_269725201.1 DNA/RNA non-specific endonuclease Machinery gene
  OIY87_RS04265 (OIY87_05580) pheS 818597..819640 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  OIY87_RS04270 (OIY87_05585) - 819676..820200 (+) 525 WP_009853915.1 GNAT family N-acetyltransferase -
  OIY87_RS04275 (OIY87_05590) pheT 820271..822676 (+) 2406 WP_269725202.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30862.99 Da        Isoelectric Point: 6.1087

>NTDB_id=763825 OIY87_RS04260 WP_269725201.1 817444..818310(+) (endA) [Streptococcus gallolyticus strain XH2168]
MAKKSKLSKQTKSLLSLVILLVGIGTGWVTLTDSNDPLNQVVSLITGDSSSEITSNQSSSDSATPTQSLAETVLTDSVKE
QLGANIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTPWTPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANLESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFVPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=763825 OIY87_RS04260 WP_269725201.1 817444..818310(+) (endA) [Streptococcus gallolyticus strain XH2168]
ATGGCAAAGAAATCAAAATTGTCTAAACAGACAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGTATTGGTACTGG
TTGGGTGACGCTAACAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGACTCCTCTTCTGAAATAA
CGTCAAATCAATCGAGTTCTGACTCAGCAACGCCAACACAATCTTTGGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAGCAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCTTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACTGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGCCTTGGACGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTACTTGGTTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTTGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAGAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGACGGTGATAATCTCTTAGCAAGCGGAACGCATTTGGAAGCCAAATCATCTGACGGTAGTCTAGAATTTAACGT
CTTTGTTCCAAATGTGCAAAGCGGACTGACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569