Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   M2Z51_RS08715 Genome accession   NZ_AP024967
Coordinates   1936957..1938306 (-) Length   449 a.a.
NCBI ID   WP_029628329.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931957..1943306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS08700 (V130003_17350) bioB 1932970..1934022 (-) 1053 WP_032476201.1 biotin synthase BioB -
  M2Z51_RS08705 (V130003_17360) bioA 1934155..1935435 (+) 1281 WP_032476200.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  M2Z51_RS08710 (V130003_17370) serS 1935546..1936853 (-) 1308 WP_032476199.1 serine--tRNA ligase -
  M2Z51_RS08715 (V130003_17380) rarA 1936957..1938306 (-) 1350 WP_029628329.1 replication-associated recombination protein A Machinery gene
  M2Z51_RS08720 (V130003_17390) lolA 1938331..1938927 (-) 597 WP_029628328.1 outer membrane lipoprotein chaperone LolA -
  M2Z51_RS08725 (V130003_17400) - 1939023..1939643 (-) 621 WP_001109757.1 YecA family protein -
  M2Z51_RS08730 (V130003_17410) dusC 1939809..1940780 (+) 972 WP_050503341.1 tRNA dihydrouridine(16) synthase DusC -
  M2Z51_RS08735 (V130003_17420) - 1940813..1942282 (-) 1470 WP_032476197.1 sensor domain-containing diguanylate cyclase -
  M2Z51_RS08740 (V130003_17430) - 1942450..1943244 (-) 795 WP_000620368.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49767.26 Da        Isoelectric Point: 5.8892

>NTDB_id=76330 M2Z51_RS08715 WP_029628329.1 1936957..1938306(-) (rarA) [Vibrio cholerae strain V130003]
MSNYSLDFSGDEDFRPLAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLTQQEIQQALQQAIADSERGLGKVAAVFADNVLDRLAELVSGDARMSLNYLELLYDMAREDDQGRKLIDLPLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSDPDAALYWAARMISAGCDPLYIARRLLAIASEDVGNADPRGMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPPHLRNAPTRLMKDLGYGEEYRYAHDEPGAY
AAGECYFPPEMSGTRYYQPTQRGLETKIAEKLAYLADLNAKSPQKRYEK

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=76330 M2Z51_RS08715 WP_029628329.1 1936957..1938306(-) (rarA) [Vibrio cholerae strain V130003]
GTGAGTAATTACAGTTTAGATTTTTCCGGCGACGAAGATTTTCGTCCGTTAGCTGCCCGTATGCGTCCACAAACCGTGGA
GCAGTATATTGGTCAGCAACACATCTTGGGACCGGGAAAGCCACTGCGCCGTGCATTAGAGGCAGGGCATATTCACTCGA
TGATTCTTTGGGGACCTCCGGGCACCGGAAAAACCACTTTAGCCGAAGTGGCAGCCAACTACGCCAATGCCGAAGTGGAA
CGCGTATCGGCGGTGACGTCCGGAGTCAAAGAAATCCGTGCCGCGATTGAAAAAGCGCGTGAGAACAAACTCAGTGGCCG
CCGTACTATTTTGTTTGTCGACGAAGTCCATCGCTTTAATAAATCGCAGCAAGATGCGTTTTTGCCGCACATTGAAGACG
GTACGGTCACTTTTATTGGCGCAACCACGGAAAACCCTTCTTTTGAGCTTAATAACGCGCTGCTTTCCCGCGCGCGGGTT
TATAAACTCACCTCGCTTACTCAACAAGAGATTCAGCAAGCTTTACAGCAGGCGATTGCCGATAGTGAGCGCGGGCTTGG
CAAAGTGGCCGCAGTGTTTGCCGATAACGTACTGGATCGCTTAGCCGAACTGGTGAGTGGCGATGCGCGCATGTCGCTCA
ATTACCTTGAGTTGCTGTATGACATGGCTCGCGAAGATGATCAGGGACGCAAGCTGATTGATCTGCCTCTGCTGGCCGAA
GTCGCTGGCGAAAAGGTGTCGCGCTTTGATAACAAGGGCGATATTTGGTACGACCTGATTTCCGCTGTGCATAAATCGAT
TCGTGGTTCCGATCCCGATGCGGCTCTGTATTGGGCGGCACGGATGATCTCCGCCGGTTGTGACCCACTGTATATCGCAC
GTCGTCTGCTCGCGATTGCCTCAGAAGATGTCGGAAATGCCGACCCGCGTGGCATGCAAGTGGCACTTTCTGCTTGGGAT
TGCTTTACCCGTGTCGGGCCAGCAGAAGGCGAACGCGCGATTGCTCAAGCGATTGTCTATCTTGCCTGCGCACCGAAAAG
TAATGCCGTGTACACCGCTTGGAAACAAGCGCTATCGGATGCGCATAATCTGCCTGAGTTTGAAGTGCCACCGCATCTAC
GCAATGCCCCCACTCGACTGATGAAAGATCTGGGTTACGGTGAGGAATATCGTTACGCCCATGATGAACCAGGTGCTTAT
GCCGCAGGTGAATGCTATTTCCCACCAGAAATGAGTGGAACTCGCTACTATCAGCCCACACAGCGCGGGCTAGAAACCAA
GATTGCTGAAAAGTTAGCGTATCTGGCGGATTTGAACGCAAAAAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(54-159)

AAA C-terminal domain (AAA_assoc_2)

(192-268)

MgsA AAA+ ATPase C terminal (MgsA_C)

(269-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.756

91.314

0.363