Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QMK42_RS29855 Genome accession   NZ_CP125365
Coordinates   6406929..6407525 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain ZY36     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6401929..6412525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK42_RS29835 (QMK42_29835) aroK 6403060..6403578 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QMK42_RS29840 (QMK42_29840) pilQ 6403590..6405734 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  QMK42_RS29845 (QMK42_29845) pilP 6405788..6406312 (-) 525 WP_223111084.1 type 4a pilus biogenesis lipoprotein PilP -
  QMK42_RS29850 (QMK42_29850) pilO 6406309..6406932 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QMK42_RS29855 (QMK42_29855) pilN 6406929..6407525 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QMK42_RS29860 (QMK42_29860) pilM 6407525..6408589 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QMK42_RS29865 (QMK42_29865) - 6408774..6411245 (+) 2472 WP_031756300.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=762844 QMK42_RS29855 WP_003095839.1 6406929..6407525(-) (pilN) [Pseudomonas aeruginosa strain ZY36]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=762844 QMK42_RS29855 WP_003095839.1 6406929..6407525(-) (pilN) [Pseudomonas aeruginosa strain ZY36]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCACTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369