Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   OU989_RS15300 Genome accession   NZ_CP113527
Coordinates   3022059..3024488 (-) Length   809 a.a.
NCBI ID   WP_274793872.1    Uniprot ID   A0AAJ5UTQ2
Organism   Lysinibacillus irui strain IRB4-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3017059..3029488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU989_RS15290 (OU989_15320) - 3019039..3020004 (-) 966 WP_274793870.1 magnesium transporter CorA family protein -
  OU989_RS15295 (OU989_15325) hpaB 3020474..3021907 (-) 1434 WP_274793871.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  OU989_RS15300 (OU989_15330) recD2 3022059..3024488 (-) 2430 WP_274793872.1 ATP-dependent RecD-like DNA helicase Machinery gene
  OU989_RS15305 (OU989_15335) hisA 3024679..3025446 (+) 768 WP_274793873.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  OU989_RS15310 (OU989_15340) - 3025443..3025730 (+) 288 WP_274793874.1 hypothetical protein -
  OU989_RS15315 (OU989_15345) - 3025945..3026673 (+) 729 WP_274793875.1 GTP pyrophosphokinase family protein -
  OU989_RS15320 (OU989_15350) - 3026758..3028194 (-) 1437 WP_274793876.1 DHA2 family efflux MFS transporter permease subunit -
  OU989_RS15325 (OU989_15355) - 3028359..3029018 (-) 660 WP_274793877.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 90692.77 Da        Isoelectric Point: 4.7355

>NTDB_id=762783 OU989_RS15300 WP_274793872.1 3022059..3024488(-) (recD2) [Lysinibacillus irui strain IRB4-01]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSTEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTETIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAIFHVLNTAA
LSDGHVYLDAEDVLPLVKDMLEQSQRQEIPFEDISKACIELREEGKICGEETRLYLPSLYFSEVGIASKIVSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPNDLTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDLNDEIIEVDAVSVEEEESKELSNEQKLTAETAPYIHPMIGMED
ISPYDFLDD

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=762783 OU989_RS15300 WP_274793872.1 3022059..3024488(-) (recD2) [Lysinibacillus irui strain IRB4-01]
ATGACAGATCATTTAGATTTATTCGAGCTCAATAAATTTTTTATACTCGGACGTCCAATCGTCTCCATTTTTCATAATGC
ACAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACAAACTTACAATATGAAGATAAAGAGATTATCGTTGTTG
GTTATTTTCCACCGCTACAAATGGATGAGCAATATCGTTTTACAGGGATTTTAAAGCAACATCCTAAATATGGAGCTCAA
TTTCAAATTGAGACTTTTACAAAAGAGGTACCTGCAACCGAACAAGGCATTATACATTACTTATCCAGTGATTTATTCGT
AGGAATTGGGAAAAAAACGGCTGAAACGATTGTTGAAAAATTAGGAGCTAATGCACTCCGTGTTATTTTGGAAGATCCTA
GCGCGCTCGATGCTGTACCACGGCTATCTACTGAAAAAAAAGAAGTGATTCATCGCACCATTGAGCAAAACTTAGGCTTA
GAACGAGTGATGATTCAGTTAAATGAGTGGGGCTTTGGACCACAGCTCGGGATGAAAATTTATCAAACCTATCGAACTGA
AACAATTGAATTATTAACAGAAAATCCATACCGTTTGATTGAAGATGTTGAGGGGGTTGGTTTCTTTCGAGCTGACGAAT
TAGGTGCGAAATTAGGCATTACTGGCAAACATCCTGATCGTGTCAAAGCAGCGATTTTCCATGTTTTAAATACGGCTGCA
TTATCGGATGGACATGTATATCTTGATGCTGAAGATGTTTTGCCCCTCGTTAAGGATATGCTTGAACAAAGCCAACGACA
GGAGATCCCATTTGAAGACATTTCTAAAGCGTGTATCGAACTGCGTGAAGAGGGAAAAATTTGTGGTGAAGAAACTCGGT
TATATTTACCATCACTTTATTTTTCTGAGGTAGGCATTGCATCGAAAATTGTTTCGCTCATTGAACGAAATAATAAGGCG
GAGCATTTTAGTAAAGATGAAATTCGTAAAGCTATTGGTGAAACAGAGGAGTTACTTAATGTTACCTATGCCGAAACACA
GGCCAATGCTATTGAGCAAGCCTTAAATTCAGCGGTCATGATTTTAACGGGCGGCCCTGGGACTGGGAAAACGACTGTTG
TCCGTGGAGTCGTTGAAGTATATGCAAAGCTGCATGGCTTATCATTAAACCCAAAAGAATATGCGCAAAAAGAGGAGCCT
TTTCCAATCATTCTTTGTGCACCAACTGGACGTGCTGCTAAACGATTAGCTGAATCGACTGAACTTCCTGCAATGACTAT
TCATCGACTACTTGGCTTTACAGGGCAAGAAAAAGAAGAAGAGACAGAGCGTGAGGTGACTGGCAAGCTGATTATTGTGG
ACGAAATGTCCATGGTGGATACATGGCTTGCTCATCAGTTATTAAAAGCATTACATGAAGATGTTCAGGTTGTCTTTGTT
GGTGACCAGGATCAGCTTCCACCCGTAGGTCCAGGACAGGTGTTAAAGGATTTATTAGCATCCAAGCAATTGCCGACGGT
TGAATTAACTGATGTCTACAGGCAAGCTGAAGGTTCTACGATTATTGAACTTGCCCATCAAATAAAAAAAGGAACCATTC
CCAATGATCTTACAGCCAAAACATCAGATCGTTCATTTATTAAGGCTTCAGCTGATCAGGTTGCGAATGTCGTTACGCAA
GTTGTAAAAAGTGCGGTGGCAAAAGGTCAAGAAATTCGTAATATTCAAGTGCTAGCCCCCATGTATAAAGGACCTGCTGG
CATTGATAATTTAAACAAAATGATACAAGAGCTCATCAATCCAAATGATACGGGTACTCGAAAAGAGCTTGTCTTCGGCG
ATGTCACCTATAGGATAAAGGATAAAGTCCTGCAGCTAGTCAATCAACCTGAAAGTAATGTTTTTAATGGTGATATGGGG
GAAGTCATAAGTATTATTAAGGCGAAGGAAACAATAGAAAAGCAAGATTTACTAGTCGTTTCCTTTGATGGTATTGAAGT
AACCTATCAACGTAGTGATTTAAATCAATTGACATTAGCCTATTGTTGTTCAATCCATAAATCACAAGGCTCTGAGTTTC
AAACCGTTATTATGCCTGTTGTCAGAGGATATTCAAAAATGTTGCGTCGTAACCTTTTATACACAGGCATTACACGTGCA
AAAAATTTCTTGATACTTTGTGGCGAACCTGATGTGCTGGCAGATGGCTTACAGCGTACGGACGATCTACAGCGATTCAC
TTCCTTACGAGCTAGACTCAACCCAATGGATCTGAATGATGAGATTATTGAAGTCGATGCAGTCTCAGTGGAAGAAGAAG
AGAGTAAAGAGCTATCCAATGAACAAAAGCTAACGGCAGAAACAGCACCTTATATTCATCCGATGATTGGTATGGAGGAT
ATCTCTCCGTATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-660)

AAA domain (AAA_30)

(343-550)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.071

100

0.534