Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OU809_RS08940 Genome accession   NZ_CP113516
Coordinates   1774536..1775315 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain 285-3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769536..1780315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU809_RS08920 (OU809_08920) trmFO 1770233..1771537 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  OU809_RS08925 (OU809_08925) xerC 1771604..1772518 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  OU809_RS08930 (OU809_08930) hslV 1772532..1773077 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  OU809_RS08935 (OU809_08935) hslU 1773094..1774497 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  OU809_RS08940 (OU809_08940) codY 1774536..1775315 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OU809_RS08945 (OU809_08945) flgB 1775668..1776057 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  OU809_RS08950 (OU809_08950) flgC 1776057..1776509 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  OU809_RS08955 (OU809_08955) fliE 1776523..1776840 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  OU809_RS08960 (OU809_08960) fliF 1776891..1778492 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  OU809_RS08965 (OU809_08965) fliG 1778506..1779522 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  OU809_RS08970 (OU809_08970) fliH 1779506..1780273 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=762600 OU809_RS08940 WP_003181756.1 1774536..1775315(+) (codY) [Bacillus paralicheniformis strain 285-3]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=762600 OU809_RS08940 WP_003181756.1 1774536..1775315(+) (codY) [Bacillus paralicheniformis strain 285-3]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467