Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   OQG81_RS04485 Genome accession   NZ_CP113440
Coordinates   818018..818884 (+) Length   288 a.a.
NCBI ID   WP_265643904.1    Uniprot ID   A0AA47FDP8
Organism   Streptococcus macedonicus strain E37     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 813018..823884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS04455 (OQG81_04455) - 813293..814171 (+) 879 WP_014294301.1 F0F1 ATP synthase subunit gamma -
  OQG81_RS04460 (OQG81_04460) atpD 814238..815644 (+) 1407 WP_014294302.1 F0F1 ATP synthase subunit beta -
  OQG81_RS04465 (OQG81_04465) - 815657..816073 (+) 417 WP_099421273.1 F0F1 ATP synthase subunit epsilon -
  OQG81_RS04470 (OQG81_04470) - 816138..816374 (+) 237 WP_014294304.1 DUF1146 family protein -
  OQG81_RS04475 (OQG81_04475) murA 816437..817711 (+) 1275 WP_058621747.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OQG81_RS04480 (OQG81_04480) - 817714..817902 (+) 189 WP_009853912.1 DNA-directed RNA polymerase subunit beta -
  OQG81_RS04485 (OQG81_04485) endA 818018..818884 (+) 867 WP_265643904.1 DNA/RNA non-specific endonuclease Machinery gene
  OQG81_RS04490 (OQG81_04490) - 818953..819087 (+) 135 WP_257235419.1 hypothetical protein -
  OQG81_RS12205 - 819115..819360 (+) 246 Protein_821 GNAT family N-acetyltransferase -
  OQG81_RS04495 (OQG81_04495) pheS 819810..820853 (+) 1044 WP_265643902.1 phenylalanine--tRNA ligase subunit alpha -
  OQG81_RS04500 (OQG81_04500) - 820889..821413 (+) 525 WP_014294308.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30887.96 Da        Isoelectric Point: 5.6882

>NTDB_id=762294 OQG81_RS04485 WP_265643904.1 818018..818884(+) (endA) [Streptococcus macedonicus strain E37]
MAKKSKLSKQTKSLMSLVILLVGIGAGWVTISDSNDPLNQVVSLITGDSSSEITSNQSSSDSATPTQSLAETVLTDSVKE
QLGENIEWNGAGAYIINDNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWTPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQKKRIRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFVPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=762294 OQG81_RS04485 WP_265643904.1 818018..818884(+) (endA) [Streptococcus macedonicus strain E37]
ATGGCAAAGAAATCAAAATTGTCTAAACAGACAAAATCCCTGATGTCTTTGGTGATTTTGTTAGTTGGTATTGGTGCTGG
TTGGGTGACGATATCAGATTCGAATGATCCGCTAAATCAAGTTGTTTCGTTAATTACTGGTGACTCCTCTTCTGAAATAA
CGTCAAATCAATCGAGTTCAGATTCGGCAACGCCAACACAATCTTTAGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTAGGAGAAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATGATAATCAAACATCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACTGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAAACAGGAAATGGGTCGACCTCTTGGACGCCTGCGGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGACCGTGGGCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAACCCTGACAATGTGGCAACACAGACGGCTTGGGCGAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAGAAAAAACGAATTCGTTATCGTGTCACCTTG
ATTTATGACGGTGATAATCTCTTAGCAAGCGGAACGCATTTGGAAGCCAAATCATCTGACGGTAGTCTAGAATTTAACGT
CTTTGTTCCAAATGTGCAAAGCGGACTGACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.726

86.111

0.566
  endA Streptococcus pneumoniae D39

65.726

86.111

0.566
  endA Streptococcus pneumoniae R6

65.726

86.111

0.566
  endA Streptococcus pneumoniae TIGR4

65.726

86.111

0.566