Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | LDM87_RS05200 | Genome accession | NZ_AP024964 |
| Coordinates | 1102878..1104053 (+) | Length | 391 a.a. |
| NCBI ID | WP_223892655.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1097878..1109053
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS05175 (OHP006_10390) | - | 1098135..1099031 (+) | 897 | WP_000697547.1 | OriC activity response regulator | - |
| LDM87_RS05180 (OHP006_10400) | - | 1099257..1100123 (+) | 867 | WP_080015634.1 | 5'-3' exonuclease | - |
| LDM87_RS05185 (OHP006_10410) | - | 1100216..1101466 (-) | 1251 | WP_223892654.1 | outer membrane family protein | - |
| LDM87_RS05190 (OHP006_10420) | - | 1101634..1102500 (+) | 867 | WP_000045798.1 | DnaJ family protein | - |
| LDM87_RS05195 (OHP006_10430) | - | 1102510..1102881 (+) | 372 | WP_000332994.1 | heat shock protein transcriptional repressor HspR | - |
| LDM87_RS05200 (OHP006_10440) | rarA | 1102878..1104053 (+) | 1176 | WP_223892655.1 | replication-associated recombination protein A | Machinery gene |
| LDM87_RS05205 (OHP006_10450) | fur | 1104213..1104665 (+) | 453 | WP_000824992.1 | ferric iron uptake transcriptional regulator | - |
| LDM87_RS05210 (OHP006_10460) | - | 1104685..1105182 (-) | 498 | WP_000780291.1 | DUF2147 domain-containing protein | - |
| LDM87_RS05215 (OHP006_10470) | - | 1105179..1105715 (-) | 537 | WP_223892656.1 | YhcH/YjgK/YiaL family protein | - |
| LDM87_RS05220 (OHP006_10480) | fliY | 1105746..1106618 (-) | 873 | WP_223892657.1 | flagellar motor switch protein FliY | - |
| LDM87_RS05225 (OHP006_10490) | fliM | 1106622..1107686 (-) | 1065 | WP_000763582.1 | flagellar motor switch protein FliM | - |
| LDM87_RS05230 (OHP006_10500) | - | 1107679..1108455 (-) | 777 | WP_000602379.1 | RNA polymerase sigma factor FliA | - |
| LDM87_RS05235 (OHP006_10510) | - | 1108433..1108747 (-) | 315 | WP_180416140.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 44018.61 Da Isoelectric Point: 7.8113
>NTDB_id=76227 LDM87_RS05200 WP_223892655.1 1102878..1104053(+) (rarA) [Helicobacter pylori strain #6]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFRLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARALERPILLFNATDFRLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDKLCTK
ALTWLKKQIEPSAKTYLLNNSTGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=76227 LDM87_RS05200 WP_223892655.1 1102878..1104053(+) (rarA) [Helicobacter pylori strain #6]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGTGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAGATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGATCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCAAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTTGCTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCGTGCACTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTTAGATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGATCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATGGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCACTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCGAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCAAAGTCTAACACGGCCTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTTGCTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.379 |
100 |
0.394 |