Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   LDM87_RS04790 Genome accession   NZ_AP024964
Coordinates   1016875..1017135 (-) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1011875..1022135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS07840 (OHP006_09570) - 1012309..1012437 (-) 129 WP_001185489.1 hypothetical protein -
  LDM87_RS04780 - 1012437..1014371 (-) 1935 Protein_941 type IA DNA topoisomerase -
  LDM87_RS04785 (OHP006_09600) - 1014364..1016862 (-) 2499 WP_223892620.1 VirB4 family type IV secretion system protein -
  LDM87_RS04790 (OHP006_09610) comB3 1016875..1017135 (-) 261 WP_000602756.1 hypothetical protein Machinery gene
  LDM87_RS04795 (OHP006_09620) - 1017136..1017438 (-) 303 WP_220983947.1 TrbC/VirB2 family protein -
  LDM87_RS04800 (OHP006_09630) - 1017428..1019344 (-) 1917 WP_223892621.1 toprim domain-containing protein -
  LDM87_RS04805 (OHP006_09640) - 1019355..1020119 (-) 765 WP_223892622.1 hypothetical protein -
  LDM87_RS04810 (OHP006_09650) - 1020272..1020958 (+) 687 WP_223892623.1 phosphatase PAP2 family protein -
  LDM87_RS04815 (OHP006_09660) - 1020979..1021911 (-) 933 WP_223892624.1 COG2958 family protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=76225 LDM87_RS04790 WP_000602756.1 1016875..1017135(-) (comB3) [Helicobacter pylori strain #6]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=76225 LDM87_RS04790 WP_000602756.1 1016875..1017135(-) (comB3) [Helicobacter pylori strain #6]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment