Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QL280_RS06865 Genome accession   NZ_CP125291
Coordinates   1366228..1366950 (-) Length   240 a.a.
NCBI ID   WP_001010373.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 105_Kz     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1361228..1371950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL280_RS06855 (QL280_06855) - 1363802..1364968 (-) 1167 WP_000521385.1 MalY/PatB family protein -
  QL280_RS06860 (QL280_06860) - 1364976..1366070 (-) 1095 WP_000031959.1 cystathionine gamma-synthase -
  QL280_RS06865 (QL280_06865) rcrP 1366228..1366950 (-) 723 WP_001010373.1 ATP-binding cassette domain-containing protein Regulator
  QL280_RS06870 (QL280_06870) - 1366975..1367910 (-) 936 WP_000768996.1 ABC transporter ATP-binding protein -
  QL280_RS06875 (QL280_06875) amiA 1368082..1370040 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  QL280_RS06880 (QL280_06880) - 1370244..1371866 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27192.08 Da        Isoelectric Point: 5.4211

>NTDB_id=762142 QL280_RS06865 WP_001010373.1 1366228..1366950(-) (rcrP) [Streptococcus pneumoniae strain 105_Kz]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGYILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEGGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=762142 QL280_RS06865 WP_001010373.1 1366228..1366950(-) (rcrP) [Streptococcus pneumoniae strain 105_Kz]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGATATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGGGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371