Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | LDM85_RS07140 | Genome accession | NZ_AP024963 |
| Coordinates | 1485023..1485283 (-) | Length | 86 a.a. |
| NCBI ID | WP_000602756.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #5 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1480023..1490283
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM85_RS07805 (OHP005_14390) | - | 1480454..1480585 (-) | 132 | WP_001185490.1 | hypothetical protein | - |
| LDM85_RS07130 (OHP005_14400) | - | 1480585..1482519 (-) | 1935 | WP_223887939.1 | type IA DNA topoisomerase | - |
| LDM85_RS07135 (OHP005_14410) | - | 1482512..1485010 (-) | 2499 | WP_223887490.1 | VirB4 family type IV secretion system protein | - |
| LDM85_RS07140 (OHP005_14420) | comB3 | 1485023..1485283 (-) | 261 | WP_000602756.1 | hypothetical protein | Machinery gene |
| LDM85_RS07145 (OHP005_14430) | - | 1485284..1485586 (-) | 303 | WP_000650126.1 | TrbC/VirB2 family protein | - |
| LDM85_RS07150 (OHP005_14440) | - | 1485576..1487492 (-) | 1917 | WP_223887491.1 | toprim domain-containing protein | - |
| LDM85_RS07155 (OHP005_14450) | - | 1487503..1488267 (-) | 765 | WP_223887492.1 | hypothetical protein | - |
| LDM85_RS07160 (OHP005_14460) | - | 1488308..1489423 (+) | 1116 | Protein_1410 | restriction endonuclease subunit R | - |
| LDM85_RS07165 (OHP005_14470) | mreC | 1489473..1490219 (-) | 747 | WP_096394555.1 | rod shape-determining protein MreC | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 10154.04 Da Isoelectric Point: 4.6082
>NTDB_id=76197 LDM85_RS07140 WP_000602756.1 1485023..1485283(-) (comB3) [Helicobacter pylori strain #5]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA
Nucleotide
Download Length: 261 bp
>NTDB_id=76197 LDM85_RS07140 WP_000602756.1 1485023..1485283(-) (comB3) [Helicobacter pylori strain #5]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTATGGTCTCTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTATGGTCTCTATTATATGGCGTAGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
44.828 |
100 |
0.453 |